Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1984
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 85 1e-17
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 28 1.2
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 28 1.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.6
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 2.8
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 3.7
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 4.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 8.5
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 8.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 8.5
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 84.6 bits (200), Expect = 1e-17
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Frame = +2
Query: 77 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 253
MAPP YA + K ND+ + + G L ++T + +GV F ++ NQ++ G + G L +
Sbjct: 1 MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58
Query: 254 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 433
F K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L +
Sbjct: 59 SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQH 118
Query: 434 DTVAVNTNLDLDLAGPVVDVAAVLNYXGWLAGVHTQFDTQKAKFSKNNFALSY 592
+ + +++ + D + + G+LAG +D QK S + Y
Sbjct: 119 PLIHTHASVNALERKFLGDF--TVGHEGFLAGAEFGYDVQKGNVSNYAATIGY 169
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Frame = +2
Query: 164 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 343
L ++ + SG + + V + + + G ++DN I +
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232
Query: 344 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 493
A L G PQ T F+ ++ T+LD +L PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 27.9 bits (59), Expect = 1.2
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +2
Query: 2 YWSRAPICVEFSVK*YQFVNL*NTDMAPPY------YADLGKKANDVFSKGYHFGVFKLD 163
Y APIC EF+ Y F L T + YA G N S YH G D
Sbjct: 284 YSENAPICFEFAK--YGFCEL-GTSCKNQHILQCTDYAMFGSCNNPQCSL-YH-GAVSAD 338
Query: 164 LKTKSESGVEFTSGITSNQESGKVFGSLS 250
+ ++E+ + T+G + ++SG GS S
Sbjct: 339 VPEQTEAPISKTAGSINPEDSGSEIGSNS 367
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 362 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 466
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 173 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 322
+S SG S + S + V +L S +K + LTF +W + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 220 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 113
L GG G+F++ L G++ ++ T+ AE +IG
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 171 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 263
P L + P + P T+KA +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 311 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 409
T+A D++ ++ A VTLEGT +TG TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 197 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 322
T+G + +G V G LS + + F EK++ + LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 561 FAFCVSNWVCTPASQPW*FSTAATSTTG 478
F F S+W P +PW FST A G
Sbjct: 1677 FNFAKSHW--EPVIEPWTFSTTAIMKDG 1702
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 2 YWSRAPICVEFSVK*YQFVNL*N 70
YWSR PIC E ++ + L N
Sbjct: 815 YWSRFPICTERAIYRLSHIKLSN 837
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,435
Number of Sequences: 5004
Number of extensions: 46093
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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