Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1984
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 78 5e-15
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 38 0.006
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 33 0.13
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 1.2
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 2.2
01_06_1545 + 38144624-38145301 29 2.8
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 6.6
05_03_0373 - 13194723-13195847,13196219-13196809 28 6.6
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 27 8.7
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 78.2 bits (184), Expect = 5e-15
Identities = 55/171 (32%), Positives = 87/171 (50%)
Frame = +2
Query: 77 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 256
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 257 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 436
+K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112
Query: 437 TVAVNTNLDLDLAGPVVDVAAVLNYXGWLAGVHTQFDTQKAKFSKNNFALS 589
+N ++ L+ + P+V+++ V GV FDT + F+K N ALS
Sbjct: 113 YAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALS 162
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/93 (29%), Positives = 40/93 (43%)
Frame = +2
Query: 314 LATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDV 493
L T T+ D GLK L F Q K+ K + + + +N + L+ A P+V
Sbjct: 229 LITTFTVHDLGTPGLKGILSIPFPYQ---KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSF 284
Query: 494 AAVLNYXGWLAGVHTQFDTQKAKFSKNNFALSY 592
+ V + G FDT F+K N LS+
Sbjct: 285 SGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSH 317
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 33.5 bits (73), Expect = 0.13
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 1/154 (0%)
Frame = +2
Query: 128 SKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTE-KWNT 304
S ++F V K + G + T+ ++ G +SS + K T + K +T
Sbjct: 54 SSSFYFQVIKAVKNISMQIGGDRGLTSTAVKKGGLYTLDVSSVYKYKS---TLVDVKVDT 110
Query: 305 DNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPV 484
++ ++T +T+ D + + VT P + GK++ + ++ + T + + PV
Sbjct: 111 ESNISTTLTVFDVLPSTKLVT--SVKLPDYNS--GKVEMQYFHENASFATAVGMK-PSPV 165
Query: 485 VDVAAVLNYXGWLAGVHTQFDTQKAKFSKNNFAL 586
V+ + G G FDT KF+K + A+
Sbjct: 166 VEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAI 199
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 86 PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 259
P Y G + D+ SK +H LDL S + G++F SG+ S + V L+ +
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314
Query: 260 AVKDYGLTFTEKWNTDNT 313
A+KDY T+ N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 575 CSWRTLLFVYQTGCVHQPANXGSLVLLQRLQLD 477
CSW + + TG V P+ G L LLQ +QL+
Sbjct: 34 CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66
>01_06_1545 + 38144624-38145301
Length = 225
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = -1
Query: 519 QPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRV 364
QP +TAA+S++ P SRSK+ + TVS E N V+VP A P+RV
Sbjct: 29 QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARV 88
Query: 363 TLRPA 349
+ A
Sbjct: 89 VVSDA 93
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 426 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 298
++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 374 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 472
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 563 TLLFVYQTGCVHQPANXGSLVLL 495
TLLFVYQTG P G L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,639,499
Number of Sequences: 37544
Number of extensions: 304277
Number of successful extensions: 869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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