Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1983
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 60 3e-10
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 2.8
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 3.7
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 4.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 26 4.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 6.4
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.5
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 8.5
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 59.7 bits (138), Expect = 3e-10
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Frame = +3
Query: 138 MAWRF-KASKYKNAAPIVPKPEACIRDVCVGSYQTYGNNICASAAFMAFNWEH-VGSSMA 311
M+ RF +ASKY++ K E C ++ + + N + + +++ NW G ++A
Sbjct: 1 MSGRFVRASKYRHIFGQTCKKELCYDNIKLSNNAWDSNLLSVNPFYLSVNWNAGAGGALA 60
Query: 312 VLPLDDCGRKSKTMPLLHAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPE-RLKES 488
V+PL++ G+ + L H+ + D +++PFH + +W +P + + E
Sbjct: 61 VIPLNERGKLPDQVNLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPEDYTVMEP 120
Query: 489 LST--PECSLSQKQRXVENVGFHPVADGLIHVAS 584
P L R V V +HP A ++ +S
Sbjct: 121 YEDVHPIAELKGHSRKVGLVQYHPTAANVLASSS 154
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 225 GSYQTYGNNICASAAFMAFNWEHVGSSMAVLPLD 326
GS+ TYG + W ++ S +A PL+
Sbjct: 146 GSFHTYGTRFIHPSWGFTLGWNYLASFLATYPLE 179
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 453 VWHIPPERLKESLSTPECSLSQKQRXVEN----VGFHPVADGLIHVAS 584
+WH +++E PEC+ + + +N +G+H D + V +
Sbjct: 1005 IWHETSYKMQEIRDNPECARQEMENIADNNDPGLGYHLTFDPNVSVTA 1052
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 360 LHAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPERLKESLSTPECSLS 515
L HS+ +T +FS ++ W +P L +S+STP S
Sbjct: 568 LWGHSNRLTSFDFSDT-GRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTS 618
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 453 VWHIPPERLKESLSTPECSLSQKQRXVENVGFHPVADGLIHV 578
VW + + S++TP S + + ++ +HP D +I V
Sbjct: 364 VWDLRSLKSSSSVATPVASFKWHRAPIYSIEWHPNEDSVIGV 405
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 391 ISVMVSEWAWSRGIVLLFLPQS 326
+SV+ ++WS GI L+ PQS
Sbjct: 2926 VSVLEQYFSWSTGITLVAAPQS 2947
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 6.4
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 147 RFKASKYKNAAPIVP---KPEACIRDVCVGSYQTYGNNICASAAFMAFNWEHVGSSMAVL 317
R +A K P+ K EA + D C+ Q YG N + ++F + E S VL
Sbjct: 1589 RLRARSAKQRFPVSQWKAKLEA-LTDGCIKCSQKYGRNSRSRSSFYSLIHESFSRSSEVL 1647
Query: 318 P 320
P
Sbjct: 1648 P 1648
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 526 RCFCEREHSGVDRDSLSLSGGMCQ 455
+C C EH G++ L L +CQ
Sbjct: 99 KCICNEEHVGIESVQLKLILLLCQ 122
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/74 (22%), Positives = 29/74 (39%)
Frame = +3
Query: 363 HAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPERLKESLSTPECSLSQKQRXVENV 542
H H+D + D++F P H ++ I RL P+ + + + V
Sbjct: 232 HRHTDIVNDVQFHPQHEALLASVSDDCTLQ---IHDTRLNPEEEAPKV-IQAHSKAINAV 287
Query: 543 GFHPVADGLIHVAS 584
+P D L+ AS
Sbjct: 288 AINPFNDYLLATAS 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,268
Number of Sequences: 5004
Number of extensions: 54471
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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