Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1983
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421     31   0.93 
04_03_0980 + 21406822-21409496,21410322-21410376                       29   2.2  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    29   3.8  
06_03_0704 + 23706318-23707024,23707093-23707222                       28   5.0  

>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
          Length = 713

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 259 HLLPLWPS-TGSMLDQAWLFCLWTTAAGKARQ-CLYSTPILIP*PIWSFL 402
           H LPLWP  T  +LD   L  L   AAG  R  C +   IL+  P+  F+
Sbjct: 648 HKLPLWPMHTAMLLDM--LALLGAYAAGSTRNWCTFKDAILLLLPVLGFV 695


>04_03_0980 + 21406822-21409496,21410322-21410376
          Length = 909

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 188 AQARSLHS*CMRRFIPDLWEQYLCICCLYGLQLGACWIKH 307
           A A + H  CMR   P+     +  CCLYGL L  C  KH
Sbjct: 134 AAAIAAHYPCMREIDPER----IVHCCLYGLFLYLCLPKH 169


>11_04_0364 -
           16791774-16792490,16792545-16793561,16793856-16793920,
           16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 273 MAFNWEHVGSSMAVLPLDDCGRKSKTMPLLHAHSDTITDMEFSPF 407
           + FNW H  S  + + +D    + +T+ + HAHS  + ++E  PF
Sbjct: 761 LRFNWMHKWSEWSGI-VDGGFPRLRTLSICHAHSLRLDNIESFPF 804


>06_03_0704 + 23706318-23707024,23707093-23707222
          Length = 278

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 243 GNNICASAAFMAFNWEHVGSSMAVLPLDDCGRKSKTMPLLHAHSD 377
           G+  CASAA      EHVG+ + V+P+     + +  PL  A S+
Sbjct: 12  GHAACASAA------EHVGAVVVVVPVSPAAARQRGPPLCRATSE 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,919,407
Number of Sequences: 37544
Number of extensions: 367410
Number of successful extensions: 833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)