Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1983
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 83 1e-16
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 83 1e-16
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 83 1e-16
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 71 5e-13
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 71 5e-13
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 71 5e-13
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 71 5e-13
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 29 2.5
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical p... 29 3.3
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l... 28 5.9
AL023847-4|CAA19550.1| 349|Caenorhabditis elegans Hypothetical ... 28 5.9
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p... 28 5.9
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 83.0 bits (196), Expect = 1e-16
Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Frame = +3
Query: 138 MAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQTYGNNICASAAFMAFNWEHVGSSMAVL 317
MAWRF ASK+KN P VPK E I DV VG+ + I ASA F+AF+ E G + VL
Sbjct: 1 MAWRFAASKFKNTTPKVPKKEETIFDVPVGNLSCTNDGIHASADFLAFHIEGEGGKLGVL 60
Query: 318 PLDDCGRKSKT-MPLLHAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPERLKESLS 494
P+ GR+++ + ++ AH + + D F F VK+W + + L+
Sbjct: 61 PITAKGRRTRNDIGIIAAHGEQVADFGFLTFADELLATCSRDEPVKIWKLSRDH-SPKLA 119
Query: 495 TPECSLSQKQRXVENVGFHPVADGLIHVAS 584
T E + E + H AD ++ V S
Sbjct: 120 T-EIDVGGGNVIAECLRAHSTADNILAVGS 148
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/112 (17%), Positives = 45/112 (40%)
Frame = +3
Query: 246 NNICASAAFMAFNWEHVGSSMAVLPLDDCGRKSKTMPLLHAHSDTITDMEFSPFHXXXXX 425
N +C S F A +G + + +++ G+ + + +TD+ ++PF
Sbjct: 587 NGVCCSNKFAAVPLAGLGV-IGIYDVNEPGKLPDGVMDGIFNKTLVTDLHWNPFDDEQLA 645
Query: 426 XXXXXXXVKVWHIPPERLKESLSTPECSLSQKQRXVENVGFHPVADGLIHVA 581
+ +W + + PE + + ++ +HP+A L+ VA
Sbjct: 646 VGTDCGQINLWRLTTNDGPRNEMEPEKIIKIGGEKITSLRWHPLASDLLAVA 697
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 83.0 bits (196), Expect = 1e-16
Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Frame = +3
Query: 138 MAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQTYGNNICASAAFMAFNWEHVGSSMAVL 317
MAWRF ASK+KN P VPK E I DV VG+ + I ASA F+AF+ E G + VL
Sbjct: 1 MAWRFAASKFKNTTPKVPKKEETIFDVPVGNLSCTNDGIHASADFLAFHIEGEGGKLGVL 60
Query: 318 PLDDCGRKSKT-MPLLHAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPERLKESLS 494
P+ GR+++ + ++ AH + + D F F VK+W + + L+
Sbjct: 61 PITAKGRRTRNDIGIIAAHGEQVADFGFLTFADELLATCSRDEPVKIWKLSRDH-SPKLA 119
Query: 495 TPECSLSQKQRXVENVGFHPVADGLIHVAS 584
T E + E + H AD ++ V S
Sbjct: 120 T-EIDVGGGNVIAECLRAHSTADNILAVGS 148
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/112 (17%), Positives = 45/112 (40%)
Frame = +3
Query: 246 NNICASAAFMAFNWEHVGSSMAVLPLDDCGRKSKTMPLLHAHSDTITDMEFSPFHXXXXX 425
N +C S F A +G + + +++ G+ + + +TD+ ++PF
Sbjct: 587 NGVCCSNKFAAVPLAGLGV-IGIYDVNEPGKLPDGVMDGIFNKTLVTDLHWNPFDDEQLA 645
Query: 426 XXXXXXXVKVWHIPPERLKESLSTPECSLSQKQRXVENVGFHPVADGLIHVA 581
+ +W + + PE + + ++ +HP+A L+ VA
Sbjct: 646 VGTDCGQINLWRLTTNDGPRNEMEPEKIIKIGGEKITSLRWHPLASDLLAVA 697
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 83.0 bits (196), Expect = 1e-16
Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Frame = +3
Query: 138 MAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQTYGNNICASAAFMAFNWEHVGSSMAVL 317
MAWRF ASK+KN P VPK E I DV VG+ + I ASA F+AF+ E G + VL
Sbjct: 1 MAWRFAASKFKNTTPKVPKKEETIFDVPVGNLSCTNDGIHASADFLAFHIEGEGGKLGVL 60
Query: 318 PLDDCGRKSKT-MPLLHAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPERLKESLS 494
P+ GR+++ + ++ AH + + D F F VK+W + + L+
Sbjct: 61 PITAKGRRTRNDIGIIAAHGEQVADFGFLTFADELLATCSRDEPVKIWKLSRDH-SPKLA 119
Query: 495 TPECSLSQKQRXVENVGFHPVADGLIHVAS 584
T E + E + H AD ++ V S
Sbjct: 120 T-EIDVGGGNVIAECLRAHSTADNILAVGS 148
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/112 (17%), Positives = 45/112 (40%)
Frame = +3
Query: 246 NNICASAAFMAFNWEHVGSSMAVLPLDDCGRKSKTMPLLHAHSDTITDMEFSPFHXXXXX 425
N +C S F A +G + + +++ G+ + + +TD+ ++PF
Sbjct: 587 NGVCCSNKFAAVPLAGLGV-IGIYDVNEPGKLPDGVMDGIFNKTLVTDLHWNPFDDEQLA 645
Query: 426 XXXXXXXVKVWHIPPERLKESLSTPECSLSQKQRXVENVGFHPVADGLIHVA 581
+ +W + + PE + + ++ +HP+A L+ VA
Sbjct: 646 VGTDCGQINLWRLTTNDGPRNEMEPEKIIKIGGEKITSLRWHPLASDLLAVA 697
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 71.3 bits (167), Expect = 5e-13
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +3
Query: 138 MAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQTYGNNIC-ASAAFMAFNWEHVGSSMAV 314
MA + SK+++ K E+C+ D+ V T+ + C + F+AF G V
Sbjct: 1 MAQIVRQSKFRHVFCKPVKHESCMSDIRVTEI-TWDSLFCDVNPKFIAFINRGAGGPFMV 59
Query: 315 LPLDDCGRKSKTMPLLHAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPERLKESLS 494
+P++ GR K P + AH ++ +SPF+ KVW IP L +LS
Sbjct: 60 IPVNKIGRVDKDYPFVDAHKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLS 119
Query: 495 TPECSLSQKQRXVENVGFHPVADGLIHVA 581
P L+ Q+ V + +HPVA+ ++ A
Sbjct: 120 EPAVELTGHQKRVNTIAWHPVANNVLLTA 148
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 71.3 bits (167), Expect = 5e-13
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +3
Query: 138 MAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQTYGNNIC-ASAAFMAFNWEHVGSSMAV 314
MA + SK+++ K E+C+ D+ V T+ + C + F+AF G V
Sbjct: 1 MAQIVRQSKFRHVFCKPVKHESCMSDIRVTEI-TWDSLFCDVNPKFIAFINRGAGGPFMV 59
Query: 315 LPLDDCGRKSKTMPLLHAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPERLKESLS 494
+P++ GR K P + AH ++ +SPF+ KVW IP L +LS
Sbjct: 60 IPVNKIGRVDKDYPFVDAHKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLS 119
Query: 495 TPECSLSQKQRXVENVGFHPVADGLIHVA 581
P L+ Q+ V + +HPVA+ ++ A
Sbjct: 120 EPAVELTGHQKRVNTIAWHPVANNVLLTA 148
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 71.3 bits (167), Expect = 5e-13
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +3
Query: 138 MAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQTYGNNIC-ASAAFMAFNWEHVGSSMAV 314
MA + SK+++ K E+C+ D+ V T+ + C + F+AF G V
Sbjct: 1 MAQIVRQSKFRHVFCKPVKHESCMSDIRVTEI-TWDSLFCDVNPKFIAFINRGAGGPFMV 59
Query: 315 LPLDDCGRKSKTMPLLHAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPERLKESLS 494
+P++ GR K P + AH ++ +SPF+ KVW IP L +LS
Sbjct: 60 IPVNKIGRVDKDYPFVDAHKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLS 119
Query: 495 TPECSLSQKQRXVENVGFHPVADGLIHVA 581
P L+ Q+ V + +HPVA+ ++ A
Sbjct: 120 EPAVELTGHQKRVNTIAWHPVANNVLLTA 148
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 71.3 bits (167), Expect = 5e-13
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +3
Query: 138 MAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQTYGNNIC-ASAAFMAFNWEHVGSSMAV 314
MA + SK+++ K E+C+ D+ V T+ + C + F+AF G V
Sbjct: 1 MAQIVRQSKFRHVFCKPVKHESCMSDIRVTEI-TWDSLFCDVNPKFIAFINRGAGGPFMV 59
Query: 315 LPLDDCGRKSKTMPLLHAHSDTITDMEFSPFHXXXXXXXXXXXXVKVWHIPPERLKESLS 494
+P++ GR K P + AH ++ +SPF+ KVW IP L +LS
Sbjct: 60 IPVNKIGRVDKDYPFVDAHKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLS 119
Query: 495 TPECSLSQKQRXVENVGFHPVADGLIHVA 581
P L+ Q+ V + +HPVA+ ++ A
Sbjct: 120 EPAVELTGHQKRVNTIAWHPVANNVLLTA 148
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
protein C23F12.1a protein.
Length = 2329
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 213 DVCVGSYQTYGNNICASAAFMAFNWEHVGSSMAVLPLDDCGRKSKTM 353
D C NN M FN EHV S LP++D G + + M
Sbjct: 16 DSCRFLINITNNNSMTHTIEMRFNGEHVSGSPWKLPVEDRGERRQEM 62
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
protein C23F12.1b protein.
Length = 2747
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 213 DVCVGSYQTYGNNICASAAFMAFNWEHVGSSMAVLPLDDCGRKSKTM 353
D C NN M FN EHV S LP++D G + + M
Sbjct: 16 DSCRFLINITNNNSMTHTIEMRFNGEHVSGSPWKLPVEDRGERRQEM 62
>Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical
protein C18E9.2a protein.
Length = 364
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 51 EYLRN*CLTRTTTFQIRKTDYFKLNK*TIMAWRFKASKYKNAA 179
+Y+R C T TT F+ + YF NK W SKY N A
Sbjct: 26 KYIRFNCPTATTMFEGNEVHYFSGNKAVDTLWE---SKYGNKA 65
>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
lineage protein 49 protein.
Length = 1042
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 354 ALSCFSCRSRPEAKQPCLIQHAPS*RP*RQQMHKYCSHKSGMNLRIH 214
ALSC C++R A+ IQ + + H C+ SG+ +RI+
Sbjct: 305 ALSCLLCKNRQNARMGACIQCSET--KCTASFHVTCARDSGLVMRIN 349
>AL023847-4|CAA19550.1| 349|Caenorhabditis elegans Hypothetical
protein Y57A10C.8 protein.
Length = 349
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 246 NNICASAAFMAFNWEHVGSSMAVLPLDDCGRKSKTMPLLHAHSDT 380
N F+ N +H+GS ++ G K+ +P+LH H T
Sbjct: 291 NGFADGLVFVIVNRKHIGSDKNLVD-STVGPKNTVIPVLHQHGPT 334
>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
protein LIN-49 protein.
Length = 1042
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 354 ALSCFSCRSRPEAKQPCLIQHAPS*RP*RQQMHKYCSHKSGMNLRIH 214
ALSC C++R A+ IQ + + H C+ SG+ +RI+
Sbjct: 305 ALSCLLCKNRQNARMGACIQCSET--KCTASFHVTCARDSGLVMRIN 349
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,258
Number of Sequences: 27780
Number of extensions: 306272
Number of successful extensions: 722
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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