Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1978
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   1.6  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   2.7  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    25   6.3  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    24   8.4  

>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 176 SSNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASK 301
           S    ++YH+K+  L+ + +   C+C   N  KLL S +  K
Sbjct: 209 SDRTDLSYHKKLNTLFTAYWDLQCMC--SNPPKLLASDTLPK 248


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 21/106 (19%), Positives = 46/106 (43%)
 Frame = +2

Query: 11  FYRLLYTPXRAVSSFTHVINKIKSVYCIKYLLIPFLFVN*LLKRCFRIYFKLLIHSSNQH 190
           F+ LL +   A +   + +     ++ I   L+  L    +++     Y   +++ + + 
Sbjct: 270 FFSLLPSTIIAGARAFYYLAPSNQMHLIVEPLLQLLLEKPIVRTTTLRYISQIVYKTPEL 329

Query: 191 INYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASKINKTLVYMI 328
              H K   L  S     CL  +   ++LL++ ++S+I   L+Y I
Sbjct: 330 FKNHIKSFFLIASDSDDTCLLKINILSRLLDAQNSSQILPELLYYI 375


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 25  LYTXKGRKLVYPCNK 69
           LYT KG K+V+P N+
Sbjct: 272 LYTPKGHKIVFPNNE 286


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 251 CIVKNKTKLLNSVSASKINKTLV 319
           C++ NKT L++S + S + +T++
Sbjct: 214 CLILNKTDLISSEALSVVRQTIL 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,645
Number of Sequences: 5004
Number of extensions: 26629
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)