Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1978
         (419 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3804|AAF47157.1|  537|Drosophila melanogaster CG3209-PA...    28   5.8  
AY052013-1|AAK93437.1|  926|Drosophila melanogaster LD47309p pro...    27   7.7  
AE013599-3135|AAM70854.1|  926|Drosophila melanogaster CG4050-PB...    27   7.7  
AE013599-3134|AAF46676.2|  926|Drosophila melanogaster CG4050-PA...    27   7.7  

>AE013599-3804|AAF47157.1|  537|Drosophila melanogaster CG3209-PA,
           isoform A protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 20  LLYTPXRAVSSFTHVINKIKSVYCIKYLLIPFLFVN*-LLKRCFRIYFKLLIHSSNQHIN 196
           ++  P R +  F  V+  + S   +  L  PF FV   L    F+I F+L+  S +  I 
Sbjct: 181 VILMPLRVLVCFVGVLFAVLSSSIVACL--PFRFVRLSLASLSFKITFRLISSSMSSFIK 238

Query: 197 YHRKIAILYISTFTTYCL 250
           +H K    Y  T + +C+
Sbjct: 239 FHNK---QYKPTVSGFCV 253


>AY052013-1|AAK93437.1|  926|Drosophila melanogaster LD47309p
           protein.
          Length = 926

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 161 KLLIHSSNQHINYHRKIAILYISTFTTYCLCIVKNKTKL 277
           K L   +   ++YH +IA  +++ F      I KN+T+L
Sbjct: 575 KALFPQAKPGVSYHARIAPNHLNVFINLANLIAKNQTRL 613


>AE013599-3135|AAM70854.1|  926|Drosophila melanogaster CG4050-PB,
           isoform B protein.
          Length = 926

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 161 KLLIHSSNQHINYHRKIAILYISTFTTYCLCIVKNKTKL 277
           K L   +   ++YH +IA  +++ F      I KN+T+L
Sbjct: 575 KALFPQAKPGVSYHARIAPNHLNVFINLANLIAKNQTRL 613


>AE013599-3134|AAF46676.2|  926|Drosophila melanogaster CG4050-PA,
           isoform A protein.
          Length = 926

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 161 KLLIHSSNQHINYHRKIAILYISTFTTYCLCIVKNKTKL 277
           K L   +   ++YH +IA  +++ F      I KN+T+L
Sbjct: 575 KALFPQAKPGVSYHARIAPNHLNVFINLANLIAKNQTRL 613


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,290,582
Number of Sequences: 53049
Number of extensions: 226527
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1271883306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)