Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1978
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69793-2|CAA93671.1|  136|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    27   4.1  
AF024503-2|AAG24099.1|  331|Caenorhabditis elegans Serpentine re...    27   5.5  

>Z69793-2|CAA93671.1|  136|Caenorhabditis elegans Hypothetical
           protein R03A10.2 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 119 FVN*LLKRCFRIYFKLLI 172
           F+  ++++CFRIYFKL++
Sbjct: 109 FLETIVRQCFRIYFKLIL 126


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 176 SSNQHINYHRKIAILYISTFTTYC-LCIVKNKTKLLNSVSAS 298
           S N  +  +R I +LYI+        C++KN  KL+N+  +S
Sbjct: 298 SKNNKVEMNRVINLLYITNENNEGHFCLIKNLDKLMNNRGSS 339


>AF024503-2|AAG24099.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein5 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +2

Query: 176 SSNQHINYHRKIAILYISTFTTYCLCI-----VKNKTKLLNSVSASKINKTLVYMIYRGL 340
           +++  + Y     I+ ++ F++YC+C+      K   K+  + + S I+ TL   +++ L
Sbjct: 186 NASDFVVYKSLFGIMSLTLFSSYCMCVYIILGYKIMKKMNENTNMSSISATLNRQLFKAL 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,461,180
Number of Sequences: 27780
Number of extensions: 138818
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)