Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1977
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    32   0.10 
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.71 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.2  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   2.9  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    27   3.8  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   8.7  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 242 PIQPINTYPQNNXAPPQNSYYPQNTYAPPQ 331
           P  P   Y   N  PPQ +Y PQ  YAPPQ
Sbjct: 14  PAPPQQAYGGPNYYPPQQNY-PQQGYAPPQ 42



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 236 PKPIQPINTYPQNNXAPPQNSYYPQNTYAPPQ 331
           P    P   YPQ   APPQ   YPQ  Y   Q
Sbjct: 24  PNYYPPQQNYPQQGYAPPQG--YPQGGYPAQQ 53


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 224 WNAPPKPIQPINTYPQN-NXAPPQNSYYP-QNTYAPP 328
           + A P+P  P   YPQ     P Q +YYP Q  YA P
Sbjct: 96  YGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQP 132


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 227  NAPPKPIQPINTYPQNN 277
            +APP P+QP+N  P +N
Sbjct: 1376 HAPPPPVQPMNAMPSHN 1392


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 392 VPVIKNEMYYGDNGSYKYEYQIADGTHVXXEGYFTNP 502
           VP+  +   YG + SY YE  I + T+     Y  +P
Sbjct: 272 VPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHP 308


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 223 VERSTQADPADKHLSPKQXRPPSKLILSSEYLCTSSKHLXXHLEHAFI 366
           +ER ++ +   K+LSP      SK+ +SS+Y   +   +  +L    I
Sbjct: 43  IERRSKRESLSKNLSPNDNSHNSKIDISSDYQLLNEYKVAYYLRPGII 90


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 416 YYGDNGSYKYEYQIADGTHVXXEGYFTNPNTEEASLVKKGWYSYTGADGKV 568
           YY D+   + E  I  G  V   GY   P   +A+  + GW+  TG  G++
Sbjct: 482 YYTDSSPPRGEVWIR-GPAVC-NGYLNRPEDNKAAFTEDGWFK-TGDVGEI 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,731
Number of Sequences: 5004
Number of extensions: 51095
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)