Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1977
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1682 - 39130696-39131705,39132355-39132583 38 0.006
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 36 0.045
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 32 0.56
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312... 31 0.98
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 30 2.3
07_03_0600 + 19866757-19867218,19867920-19868429 29 3.0
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 3.9
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 29 3.9
05_01_0142 - 940421-940701,941262-941574 28 6.9
11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292 28 9.1
11_01_0385 + 2915532-2916482 28 9.1
06_02_0024 - 10714741-10716241,10716774-10717840 28 9.1
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 28 9.1
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 194 PPIQWKPXNTWNAPPKPI-QPINTYPQNNXAPPQNSYYPQNTY---APPQ 331
PP Q+ P N++ APP P Y N+ PP N Y P Y PPQ
Sbjct: 239 PPYQYTPPNSYQAPPTSYNHPPPPYGYNSPIPPTNKYLPPPYYFNSPPPQ 288
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 194 PPIQWK-PXNTWNAPPKPIQPINTYPQNNXAPPQ---NSYYPQNTYAPP 328
PP+ + P + +PP P N+ P N+ +PP S P Y+PP
Sbjct: 301 PPLAHQYPPPPYKSPPIPPYYFNSPPANHYSPPPYNFGSSPPTYQYSPP 349
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 35.5 bits (78), Expect = 0.045
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 194 PPIQWKPXNTWNAPPKPIQPINTYPQNNXAPPQNSYYPQNTYAPPQ 331
PP Q P + PP YP PP SY PQ +Y PPQ
Sbjct: 193 PPAQGYPPAAY--PPAGYPQGGAYPPPGSYPPPGSYPPQGSYPPPQ 236
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +2
Query: 194 PPIQWKPXNTWNAPPKPIQPINTYPQNNXAPPQNSY------YPQNTYAPPQN 334
PP P + APP N Y ++ PP +SY YP + APP N
Sbjct: 308 PPSYGGPGGDYAAPPSSYGGNNAYNSDSAVPPPSSYGGGPGSYPPSYGAPPPN 360
>03_05_0388 +
23726957-23727418,23730016-23730262,23731072-23731220,
23731313-23731597,23731665-23731889,23734251-23734445
Length = 520
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +2
Query: 197 PIQWKPXNTWNAPPKPIQP----INTYPQNNXAPPQNSYYP 307
P W P W PP + P +PQ PQ++YYP
Sbjct: 301 PQPWGPPQPWGPPPSHLPPGGPGYGGHPQFMPPRPQDNYYP 341
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 184 EPEPAYPVETXKYVERSTQADPADKHLSPKQXRPPSKLILSSEYLCTSSK 333
EP PA +E + + ++D A LSP++ R PS L LSS YL S+K
Sbjct: 1437 EPSPA--LEKKRIEKVKPKSDAA---LSPEESRKPSGLQLSSTYLQGSTK 1481
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +2
Query: 194 PPIQWKPXNTWNAPPKPIQPINTYPQNNXAPPQNSYYPQNTYAPP 328
PP Q P PP P Q PQ P Q P YAPP
Sbjct: 62 PPPQQPPAMWGQPPPPPPQYAPPPPQQFQLPHQQYAPPPQHYAPP 106
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 233 PPKPIQPIN-TYPQNNXAPPQNSYYPQNTYAPP 328
PP PI P+N P N P Y+ N + PP
Sbjct: 1213 PPPPIAPLNPPGPHGNFPAPPAPYHGNNYHQPP 1245
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 194 PPIQWKPXNTWNAPPKPIQPINTYPQNNXAPPQNSYYPQNTYAPPQ 331
PP Q +P APP P Q P + PP+ P T PPQ
Sbjct: 67 PPSQ-EPDTPEPAPPTPPQQ-QQQPWQSPLPPRREPAPPRTVVPPQ 110
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 212 PXNTWNAPPKPIQPINTYPQNNXAPPQNSYYPQNTYAPP 328
P + PP P + YPQ PP YPQ+ PP
Sbjct: 57 PPGAYPPPPGAYPPQHGYPQPGGYPPPGG-YPQHGGYPP 94
>11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292
Length = 299
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 184 EPEPAYPVETXKYVERSTQADPADKHLSPKQXRP 285
+P P Y ET + + +D ADK + P++ P
Sbjct: 260 QPRPYYQGETNGVAKEAPSSDSADKEIQPEKVVP 293
>11_01_0385 + 2915532-2916482
Length = 316
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 203 QWKPXNTWNAPPKPIQPINTYPQNNXAPPQNSYYPQNTYAPP 328
QW P +N PP P P +P N PP ++P T A P
Sbjct: 178 QWPPLPPFNQPPTPEWP---HPGNKW-PPLPPFHPPPTPAWP 215
>06_02_0024 - 10714741-10716241,10716774-10717840
Length = 855
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 496 REVAFXAYVCSIGDLILVFVTAIITIIHFILDHWDGS 386
R+ + V +I +LV+V +I I+ F LDH DGS
Sbjct: 469 RDASTSINVMAIAGAVLVYV--VIHIVFFTLDHNDGS 503
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 233 PPKPIQPINTYPQNNXAPPQNSYYPQNTYAPPQ 331
PP+ ++P+ +P APP YY P+
Sbjct: 193 PPEALRPLPPFPPTMLAPPAYPYYHPQPQPDPE 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,256
Number of Sequences: 37544
Number of extensions: 376190
Number of successful extensions: 1100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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