Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1977
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093746-1|AAH93746.2|  778|Homo sapiens PDZ domain containing R...    36   0.21 
BC093744-1|AAH93744.1|  778|Homo sapiens PDZ domain containing R...    36   0.21 
AK131554-1|BAD18688.1|  776|Homo sapiens protein ( Homo sapiens ...    36   0.21 
BC025688-1|AAH25688.1|  377|Homo sapiens mucin 7, secreted protein.    32   2.5  

>BC093746-1|AAH93746.2|  778|Homo sapiens PDZ domain containing RING
           finger 4 protein.
          Length = 778

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = +1

Query: 169 LVRTFEPEPAYPVETX-KYVERSTQADPADKHLSP-KQXRPPSKLILS-SEYLCTSSKHL 339
           L RT    PAY + +  + +  STQ D   +H+    + RPP+  +     +L + S H 
Sbjct: 53  LRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHS 112

Query: 340 XXHLEHAFISDFDYNNSRPSDQE 408
              +EH F  D +Y +S P+D +
Sbjct: 113 LHPMEHEFYEDNEYISSLPADAD 135


>BC093744-1|AAH93744.1|  778|Homo sapiens PDZ domain containing RING
           finger 4 protein.
          Length = 778

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = +1

Query: 169 LVRTFEPEPAYPVETX-KYVERSTQADPADKHLSP-KQXRPPSKLILS-SEYLCTSSKHL 339
           L RT    PAY + +  + +  STQ D   +H+    + RPP+  +     +L + S H 
Sbjct: 53  LRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHS 112

Query: 340 XXHLEHAFISDFDYNNSRPSDQE 408
              +EH F  D +Y +S P+D +
Sbjct: 113 LHPMEHEFYEDNEYISSLPADAD 135


>AK131554-1|BAD18688.1|  776|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16796 fis, clone TBAES2008133, moderately
           similar to Mus musculus semaF cytoplasmic domain
           associated protein 3. ).
          Length = 776

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = +1

Query: 169 LVRTFEPEPAYPVETX-KYVERSTQADPADKHLSP-KQXRPPSKLILS-SEYLCTSSKHL 339
           L RT    PAY + +  + +  STQ D   +H+    + RPP+  +     +L + S H 
Sbjct: 51  LRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHS 110

Query: 340 XXHLEHAFISDFDYNNSRPSDQE 408
              +EH F  D +Y +S P+D +
Sbjct: 111 LHPMEHEFYEDNEYISSLPADAD 133


>BC025688-1|AAH25688.1|  377|Homo sapiens mucin 7, secreted protein.
          Length = 377

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = +2

Query: 194 PPIQWKPXNTWNAPPKPIQPINTYPQNNXAPPQNSYYPQNTYAPP 328
           PP    P  T  APP P       P    APP +S  P+ T APP
Sbjct: 202 PPSSSAPPETTAAPPTP-------PATTPAPPSSSAPPETTAAPP 239


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,777,701
Number of Sequences: 237096
Number of extensions: 2039971
Number of successful extensions: 5979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5975
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)