Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1977
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ...    29   3.5  
Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC084152-9|AAK39313.1|  296|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    28   8.1  
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut...    28   8.1  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    28   8.1  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   8.1  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   8.1  

>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 194 PPIQWKPXNTWNAPPKPIQP-INTY-PQNNXAPPQNSYYPQNTYAPP 328
           PP    P    NAPP P  P IN + P     PP     P +T APP
Sbjct: 475 PPSSLLPLINTNAPPPPPMPSINGHAPNPPPPPPLLGIAPMSTNAPP 521


>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
           protein.
          Length = 1497

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 401 SLGRELL*SKSDMKACSRWXXRCFEEVHRYSEDSMSF 291
           ++ RE L S   MKA + +  R F  + +++EDS+SF
Sbjct: 803 TISREELASAMGMKANNEFVKRMFAMIAKHNEDSLSF 839


>Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical
           protein T06E4.11 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +2

Query: 194 PPIQWKPXNTWNAPPKPIQPINTYPQNNXAPPQNSYYPQNTYAPPQN 334
           PP Q KP           Q    YPQ+  AP     YPQ    PPQ+
Sbjct: 30  PPSQQKPQGYTQGYQDSAQVPQGYPQSQQAPQAPQGYPQQ---PPQD 73


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 227 NAPPKPIQPINTYPQNNXAPPQNSYYPQNTYAPP 328
           N PP P QP     Q +  PPQ+   P N++APP
Sbjct: 49  NLPP-PQQPYEHPAQQH--PPQHHSVPPNSFAPP 79


>AC084152-9|AAK39313.1|  296|Caenorhabditis elegans Hypothetical
           protein Y102A11A.1 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 227 NAPPKPIQPINTYPQNNXAPPQNSYYPQNTYAPPQ 331
           NAP  P+QPI      N  PP     PQ    PPQ
Sbjct: 171 NAPVPPVQPIFNI---NSGPPAAQPAPQQIMIPPQ 202


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 602  SQSCRPSSGRCKLCHQ 555
            S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 602  SQSCRPSSGRCKLCHQ 555
            S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 197 PIQWKPXNTWNAPPKPIQPINTYPQNNXAPPQNSY 301
           P+ +   + W  P    QP  + P N  +PPQ  Y
Sbjct: 33  PLDFDMEHNWQEPGPSQQPDPSIPGNQHSPPQEYY 67


>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered
           cuticle protein 3 protein.
          Length = 1497

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 401 SLGRELL*SKSDMKACSRWXXRCFEEVHRYSEDSMSF 291
           ++ RE L S   MKA + +  R F    +++EDS+SF
Sbjct: 803 TISREELASAMGMKANNEFVKRMFAMTAKHNEDSLSF 839


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 401 SLGRELL*SKSDMKACSRWXXRCFEEVHRYSEDSMSF 291
           ++ RE L S   MKA + +  R F    +++EDS+SF
Sbjct: 811 TISREELASAMGMKANNEFVKRMFAMTAKHNEDSLSF 847


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 602  SQSCRPSSGRCKLCHQ 555
            S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 602  SQSCRPSSGRCKLCHQ 555
            S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,613
Number of Sequences: 27780
Number of extensions: 303365
Number of successful extensions: 1015
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)