Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1976
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 283 2e-77
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 283 2e-77
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 283 2e-77
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 64 2e-11
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 29 0.54
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.2
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 6.6
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 26 6.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 6.6
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 283 bits (693), Expect = 2e-77
Identities = 123/176 (69%), Positives = 148/176 (84%)
Frame = -2
Query: 629 DPYKFKXRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 450
+PY ++ E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG
Sbjct: 64 NPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRG 123
Query: 449 RLARASGNFATVIGHNPDAKRTRVKLPXGAKKVXPSSNRGMVGIVAGGGRIDKPILKAGR 270
L R+SGN+ ++GH+ D +TRVKLP GAKKV PSS RG+VGIVAGGGRIDKP+LKAGR
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGR 183
Query: 269 AYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 102
A+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 184 AFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
Score = 32.3 bits (70), Expect = 0.076
Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 715 HGYIKGSCLRI*SHXXGRGAPLAVVHF-PPIH 623
HGYI+G +I H GRGAPLA V F P H
Sbjct: 37 HGYIRGVVQKI-IHDPGRGAPLAKVAFRNPYH 67
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 283 bits (693), Expect = 2e-77
Identities = 123/176 (69%), Positives = 148/176 (84%)
Frame = -2
Query: 629 DPYKFKXRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 450
+PY ++ E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG
Sbjct: 64 NPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRG 123
Query: 449 RLARASGNFATVIGHNPDAKRTRVKLPXGAKKVXPSSNRGMVGIVAGGGRIDKPILKAGR 270
L R+SGN+ ++GH+ D +TRVKLP GAKKV PSS RG+VGIVAGGGRIDKP+LKAGR
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGR 183
Query: 269 AYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 102
A+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 184 AFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
Score = 32.3 bits (70), Expect = 0.076
Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 715 HGYIKGSCLRI*SHXXGRGAPLAVVHF-PPIH 623
HGYI+G +I H GRGAPLA V F P H
Sbjct: 37 HGYIRGVVQKI-IHDPGRGAPLAKVAFRNPYH 67
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 283 bits (693), Expect = 2e-77
Identities = 123/176 (69%), Positives = 148/176 (84%)
Frame = -2
Query: 629 DPYKFKXRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 450
+PY ++ E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG
Sbjct: 64 NPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRG 123
Query: 449 RLARASGNFATVIGHNPDAKRTRVKLPXGAKKVXPSSNRGMVGIVAGGGRIDKPILKAGR 270
L R+SGN+ ++GH+ D +TRVKLP GAKKV PSS RG+VGIVAGGGRIDKP+LKAGR
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGR 183
Query: 269 AYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 102
A+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 184 AFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
Score = 32.3 bits (70), Expect = 0.076
Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 715 HGYIKGSCLRI*SHXXGRGAPLAVVHF-PPIH 623
HGYI+G +I H GRGAPLA V F P H
Sbjct: 37 HGYIRGVVQKI-IHDPGRGAPLAKVAFRNPYH 67
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 64.5 bits (150), Expect = 2e-11
Identities = 40/125 (32%), Positives = 67/125 (53%)
Frame = -2
Query: 536 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPXGAK 357
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L G +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 356 KVXPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGN 177
+ ++ +G+V+ + + KAGR+ ++ R P VRG AMNP +HPHGGG
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGG 274
Query: 176 HQHIG 162
+ IG
Sbjct: 275 GKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 310 PATIPTMPLLLDGXTFLAPXGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 480
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 299 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 207
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 451 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 549
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 358 LAPXGSFTLVRLASGLCPITVAKFPEARARRPLSPI 465
+AP + T+ ++A+GLC + RA PL PI
Sbjct: 116 IAPLSANTMAKMANGLCDNLLTSL--IRAWAPLKPI 149
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.6
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +3
Query: 93 GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPAVTFDLVLVV 266
G ASS+ + A SS +GSL Y T V ++ R G ++T + + F
Sbjct: 439 GSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEA 498
Query: 267 CPSSFQ--NRFVNTSTSSNNTDHASV 338
+S Q + ++S++SN +SV
Sbjct: 499 TDTSVQTSSAIYDSSSTSNIQSSSSV 524
>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 229 YGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLLLDGXTFLAPXGSFTLVRLA 396
Y + +L LY W P + L+ R PP +PT + ++ A + LV LA
Sbjct: 152 YHGRYKLELYEWDGTPKQPMFLAYR-PPKMLPTSTIAVNTIQTAAKRWTAPLVPLA 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,244
Number of Sequences: 5004
Number of extensions: 63975
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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