Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1976
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 287 8e-78
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.24
07_01_1201 - 11419851-11419913,11420090-11420311 30 2.3
03_03_0091 - 14371528-14372661 30 2.3
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.0
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 5.2
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 5.2
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 5.2
12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741 28 6.9
08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167 28 6.9
04_03_0142 + 11773124-11774158 28 9.1
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 287 bits (703), Expect = 8e-78
Identities = 133/214 (62%), Positives = 163/214 (76%)
Frame = -2
Query: 743 FVSLDYXERPWIHQGELFKDIIPXPW*RCXFGCCTLPADPYKFKXRKELFIAPEGLYTGQ 564
F SLD+ ER +G + DII P T P+++K +KELF+A EG+YTGQ
Sbjct: 29 FRSLDFGERNGYLKG-VVTDIIHDPGRGAPLAKVTF-RHPFRYKHQKELFVAAEGMYTGQ 86
Query: 563 FVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 384
FVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HNPD +
Sbjct: 87 FVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTS 146
Query: 383 RVKLPXGAKKVXPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNP 204
R+KLP GAKK+ PSS R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNP
Sbjct: 147 RIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNP 206
Query: 203 VEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 102
VEHPHGGGNHQHIG ASTV+R G+KVGLIAA
Sbjct: 207 VEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 312 WRWTY*QTYFESWKGIPQVQG 250
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 295 SIRPPPATIPTMPLLLDGXTFLAPXGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 474
++ PPP +P +P + P G +G P A R+P +P+F S
Sbjct: 12 ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
Query: 475 RL 480
R+
Sbjct: 71 RV 72
>03_03_0091 - 14371528-14372661
Length = 377
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 307 PPATIPTMPLLLDGXTFLAPXGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 480
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 481 HTMVPSGIAPTGITFP 528
M+ +G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 435 LWKLRHCDWT 406
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 5.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 312 WRWTY*QTYFESWKGIPQVQG 250
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +2
Query: 404 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 493
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 221 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 114
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741
Length = 118
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 564 LACVEPFGSNEXLLPXLELVWIGGKCTTAKGAPLPXXWD-YILKQLPLM 707
L C FG + + P +E+ G + T PL WD K+LP +
Sbjct: 60 LVCQRGFGYSSMMHPNVEITRTGFRAVTTCRLPLTNPWDTQQTKELPYL 108
>08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167
Length = 214
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 205 GFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLL 339
G + P +G + ++T +L LP ++ L +R PT+PLL
Sbjct: 91 GLLRRPSRHGSRQQVTWFLETYLPGTELTLPLRYKEFPGPTLPLL 135
>04_03_0142 + 11773124-11774158
Length = 344
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 355 FLAPXGSFTLVRLASGLCPITVAKFP 432
FLA G+F +V LASGL P+ V P
Sbjct: 66 FLAWLGAFKVVLLASGLGPLAVDGLP 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,938,800
Number of Sequences: 37544
Number of extensions: 475129
Number of successful extensions: 1411
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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