Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1975
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 74 5e-15
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 28 0.39
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 1.6
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 26 1.6
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 26 1.6
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 26 1.6
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 2.1
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 3.7
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 24 4.8
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 24 4.8
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 24 6.4
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po... 24 6.4
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 24 6.4
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 23 8.5
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 23 8.5
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 74.1 bits (174), Expect = 5e-15
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 22/121 (18%)
Frame = +3
Query: 21 KAIQYEKLRKPYVINNLHMQYDIQDRRRVYAILEGEGIEIPRYAVLDRDSPDPKHHELVE 200
KA +Y +LRKP+ +N++ Q + DRR V IL+ + P+ + RD PK ++++E
Sbjct: 98 KAEKYVELRKPFCVNDVVFQELLWDRRLVLNILDAIRVSTPQRLICSRDG-GPKINKVLE 156
Query: 201 S----------------------EDHVEVNGVVFNKPFVEKPVSAEDHNIYIYYPTSAGG 314
ED + V+G + KP+VEKPV EDHNIYIY+P S GG
Sbjct: 157 EKLRRKFGIEITEVPTPEVKMLDEDTLSVDGKIIKKPYVEKPVYGEDHNIYIYFPKSVGG 216
Query: 315 G 317
G
Sbjct: 217 G 217
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.9 bits (59), Expect = 0.39
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 54 YVINNLH--MQYDIQDRRRVYAILEG-EGIEIPRYAVLDRDSPDPKHHELVESEDH 212
YV++ +H M YD++DR R Y L E R VL+ K E++ S D+
Sbjct: 530 YVLSLIHFDMSYDLRDRARFYKELASTPSSEFTRRIVLESKGNSQK--EIIASRDY 583
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 1.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 27 IQYEKLRKPYVINNLHMQY 83
+ Y+KL K +V+N LHM +
Sbjct: 468 VSYQKLLKSHVMNKLHMAH 486
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 1.6
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -3
Query: 311 PSRRRVVNVYIVVLSGHGLLHERLVEHNP 225
P++ +++N Y ++SG+G +R + P
Sbjct: 514 PTKAQLINAYSYIVSGNGFNEDRKIVFQP 542
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 1.6
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 42 LRKPYVINNLHMQYDIQDRRRVYAILEGEGIEIPRYAVLDRDSPDPKHHEL 194
L ++IN++ +I + ++ +E +E PRY + RD D + H+L
Sbjct: 69 LEPTHLINDIDDDNEIIEEKKETEKVEESELE-PRYTRVFRDEDDDQKHQL 118
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 81 YDIQDRRRVYAILEGEGIEIPRYAVLDRDSPDPKHHELVESEDHVEVNGVVFNKPFV 251
Y+I+D R ++ LE I++P + R+ +L E+ED + ++ + N F+
Sbjct: 233 YEIKDSRLIHIPLEETAIDVPAKDSV-REDIQKLIDDLYENEDVMFIHLSILNSHFL 288
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +3
Query: 165 DSPDPKHHELVESEDHVEVNGVVFNKPFVEKPVSAEDHNIYIYYP 299
D P P + L ++ +E+ ++ F + EDH +Y P
Sbjct: 70 DDPVPYNFALHHEDETIEIQDNLYTSVFHNGLMKTEDHLTLLYTP 114
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 3.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 90 QDRRRVYAILEGEGIEIPRYAVLDRDSPDPKHHELVESEDHVEVNGVV 233
++RRR + E + + ++++P P + ED VEV G V
Sbjct: 459 EERRRAIEVAEQRQLIVNHELEQEKNAPSPTDDKSYVFEDGVEVVGQV 506
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 24.2 bits (50), Expect = 4.8
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = -2
Query: 201 IQLTRDVLDLVSLYPEPRTVVSLYLPLPVWRKL 103
+ L +++L ++ + +PR+++S W+KL
Sbjct: 32 LNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKL 64
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 4.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 237 NKPFVEKPVSAEDHNIYIYYP 299
++PF+E +SA D + +Y P
Sbjct: 613 HEPFIEATISAFDEGVGVYNP 633
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 245 VRGEARVR*GPQYIHLLPDVGW 310
+RG R + P++IH L D+G+
Sbjct: 241 IRGTLRYQGFPEFIHCLVDMGF 262
>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 23.8 bits (49), Expect = 6.4
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +3
Query: 6 ASHWXKAIQYEKLRKPYVIN-----NLHMQYDIQDRRRVYAILEGEGIEIPRY 149
AS+ KA++ + L+K + +H QY + D V I + +++P++
Sbjct: 38 ASYNDKAVEEDTLKKSSTGSLPSGQQVHCQYVLDDPNHVEGISVDQSLQVPKF 90
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 281 IVVLSGHGLLHERLVEHNPVHFDVV 207
+ V S L +ERL+++NP++F ++
Sbjct: 121 VTVASVFSLKNERLLKYNPLNFKLL 145
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 15 WXKAIQYEKLRKP 53
W K+I +EKL+KP
Sbjct: 513 WGKSIFFEKLKKP 525
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 189 ELVESEDHVEVNGVVFNKPFVEKPV 263
E++E DH GV ++ ++ KP+
Sbjct: 516 EIIEKRDHPYFVGVQYHPEYLSKPL 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,179
Number of Sequences: 5004
Number of extensions: 27655
Number of successful extensions: 77
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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