Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1975
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 110 2e-25
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042... 109 6e-25
07_03_0632 - 20112297-20116562 27 2.4
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419 27 3.2
07_01_0857 - 7127681-7127830,7128896-7129414 27 4.2
01_06_1126 - 34686376-34686843,34686944-34687230,34687329-34687524 27 4.2
09_02_0290 - 6963673-6963966,6964279-6964590,6964693-6964832,696... 26 5.6
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301... 26 5.6
12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744... 26 7.4
01_06_0418 + 29210310-29210612,29211154-29211541,29211946-292121... 26 7.4
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 25 9.7
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 25 9.7
08_02_0718 + 20382323-20385046 25 9.7
02_05_0040 + 25341418-25341810 25 9.7
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 25 9.7
>03_05_0741 +
27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 110 bits (265), Expect = 2e-25
Identities = 51/99 (51%), Positives = 68/99 (68%)
Frame = +3
Query: 21 KAIQYEKLRKPYVINNLHMQYDIQDRRRVYAILEGEGIEIPRYAVLDRDSPDPKHHELVE 200
KA Y LR+P+++N L Q+ + DRR+VY LE GI +P YA+++R+ P + +E
Sbjct: 116 KAEAYAALRRPFLVNELEPQHLLHDRRKVYEHLEKYGIPVPNYALVNREYPYQELDYFIE 175
Query: 201 SEDHVEVNGVVFNKPFVEKPVSAEDHNIYIYYPTSAGGG 317
ED VEV+G F KPFVEKPV+ +DH I IYYP SAGGG
Sbjct: 176 QEDFVEVHGKRFMKPFVEKPVNGDDHRIMIYYPNSAGGG 214
>01_06_0909 -
32903520-32903828,32903899-32903973,32904068-32904235,
32904508-32904565,32904638-32904879,32905145-32905216,
32905865-32905943,32906734-32907062,32907137-32907256,
32907355-32907429,32908260-32908342,32908942-32908984,
32909271-32909429,32910203-32910281,32910685-32910755,
32910847-32910946,32911023-32911229,32911348-32911442,
32912362-32912436,32912621-32912713,32913078-32913182,
32913851-32913921,32914943-32915096,32916035-32916098,
32916717-32916800,32917543-32917589,32918352-32918411,
32918521-32918592
Length = 1062
Score = 109 bits (261), Expect = 6e-25
Identities = 48/99 (48%), Positives = 69/99 (69%)
Frame = +3
Query: 21 KAIQYEKLRKPYVINNLHMQYDIQDRRRVYAILEGEGIEIPRYAVLDRDSPDPKHHELVE 200
KA +Y LR+P+++N L QY + DR +VY L+ G+ +P YAV+ R+ P+ + VE
Sbjct: 79 KAEKYAALRRPFLVNELDPQYLLHDRSKVYEHLKLFGVPVPTYAVVRREYPNQELKYFVE 138
Query: 201 SEDHVEVNGVVFNKPFVEKPVSAEDHNIYIYYPTSAGGG 317
+D +E++G F KPFVEKP+ +DHNI IYYP+SAGGG
Sbjct: 139 QDDFIEIHGKRFYKPFVEKPIDGDDHNIMIYYPSSAGGG 177
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 27.5 bits (58), Expect = 2.4
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +3
Query: 21 KAIQYEKLRKPYVINNLHMQYDIQDRRRVYAILEGEGIEIPRYAVLDRDSPDPKHHELVE 200
+AIQ RK YV L +++D R L G+ E+ ++ DR P LVE
Sbjct: 843 EAIQANLGRKEYV-TCLALKWDRNQSSRGKYNLYGK--ELSQF---DRGQKQPLQASLVE 896
Query: 201 SEDHVEVNGVVFNKPFVEKP 260
+++G + N P V KP
Sbjct: 897 KNYTSDISGYLMNPPEVIKP 916
>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
Length = 528
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 165 DSPDPKHHELVESEDHVEVNGVVFNKPFVEKPVS 266
DS DP+ E +++ H + N+PF+ K VS
Sbjct: 237 DSDDPRERECLKTVLHRIYGKFMGNRPFIRKAVS 270
>07_01_0857 - 7127681-7127830,7128896-7129414
Length = 222
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 153 VLDRDSPDPKHHELVESEDHVEVNGVVFNKP 245
+ D+D D + EL ESED V +F P
Sbjct: 181 ISDKDREDDEEEELFESEDDVNSRSFLFPIP 211
>01_06_1126 - 34686376-34686843,34686944-34687230,34687329-34687524
Length = 316
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 15 WXKAIQYEKLRKPYVINNLHMQ 80
W + +++L+ PY++N HMQ
Sbjct: 261 WFTGLNFDELQPPYMMNLQHMQ 282
>09_02_0290 -
6963673-6963966,6964279-6964590,6964693-6964832,
6965124-6965187,6965263-6965493,6965580-6965714,
6966484-6966517,6966664-6966692
Length = 412
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 120 EGEGIEIPRYAVLDRDSPDPKHHELVESEDHVEVNGVV 233
EGEG R+A+ D D + HE+++ + + + +GV+
Sbjct: 3 EGEGSSSRRWALGDPDVVETVAHEIIDLDANDDPDGVM 40
>08_02_1512 +
27627740-27629009,27629111-27629256,27629842-27630101,
27630346-27630412,27630511-27630545,27630818-27631587,
27631633-27631793
Length = 902
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 159 DRDSPDPKHHELVESEDHVEVNGVVFNKPFVEKPVSAEDH 278
D P+ +H E+ + ++H + NG+ P K VS E H
Sbjct: 297 DNGIPEVEHDEVDKVDNHQDANGM----PLPAKDVSEEQH 332
>12_01_0811 -
7440413-7440712,7441285-7441398,7441448-7441705,
7441825-7441998,7442344-7442514,7442607-7442874,
7443171-7443937,7444437-7445123
Length = 912
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 153 VLDRDSPDPKHHELVE---SEDHVEVN 224
V D PDP H L+E SEDH+E N
Sbjct: 793 VPDDFCPDPVQHSLLEALESEDHLEGN 819
>01_06_0418 +
29210310-29210612,29211154-29211541,29211946-29212143,
29212626-29213092,29213210-29213749,29214275-29214477,
29214567-29214624
Length = 718
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 36 EKLRKPYVINNLHM---QYDIQDRRRVYAILEGEGIEIPRYAVLDRD 167
EK+ Y ++ L + D QDR + ++ EGI I R AV +D
Sbjct: 660 EKIMDSYGVDQLPVVSEHVDRQDRGLLVGFVDKEGIAIARRAVATKD 706
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 63 NNLHMQYDIQDRRRVYAIL 119
+NL QYD RR +YA+L
Sbjct: 189 DNLQQQYDTLRRRELYAVL 207
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 21 KAIQYEKLRKPYVINNLHMQYDIQDRRRVYA-ILEGEGIEIPRYAVLDRDSPDPKHH 188
+A+ K R+ Y + + D+ +Y L G + ++A + D P P HH
Sbjct: 12 EAVSRCKARRRYTKQLVQARRDMAAAHALYLRALRATGAALLQFASAEADHPHPHHH 68
>08_02_0718 + 20382323-20385046
Length = 907
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 195 LTRDVLDLVSLYPEPRTVVSLYL--PLP 118
L ++LDL SL P P+ + LYL PLP
Sbjct: 729 LDDEILDLGSLNPAPQCLRRLYLRGPLP 756
>02_05_0040 + 25341418-25341810
Length = 130
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 297 GSKCIYCGPQRTRASPRTAC 238
GSK GPQR R +PR C
Sbjct: 84 GSKRRCSGPQRRRGAPRRRC 103
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 165 DSPDPKHHELVESEDHVEVNGVVFNKPFVEKPVS 266
DS DP+ + +++ H + N+PF+ K VS
Sbjct: 206 DSDDPRERDSLKTVLHRIYGKFMGNRPFIRKAVS 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,636,486
Number of Sequences: 37544
Number of extensions: 191631
Number of successful extensions: 524
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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