Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1967
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    89   8e-19
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   2.9  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.9  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.8  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.8  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   8.7  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 88.6 bits (210), Expect = 8e-19
 Identities = 58/143 (40%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
 Frame = +2

Query: 308 KKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 487
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 488 QATMAAAERFKAPET------TATGNDASTTGTTVAPIAE-XXXXXXXXXXXXXXXXXXX 646
           QA      + +A ET      T    DA    T  A I E                    
Sbjct: 84  QARAFNESQKQATETKEEAAITEESGDAQPADT--AKIEESFEQEKAVDETGVDAKDIEL 141

Query: 647 XMSQANVSRAKAVRALKNNQSDI 715
            M+QANVSRAKAV ALK N SD+
Sbjct: 142 VMAQANVSRAKAVTALKENNSDV 164


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 95  QQYIKMPELTELDKATASMTEKRKEE 172
           ++YIK  +LTELD     +T+ RK +
Sbjct: 205 KEYIKKCQLTELDPTQQLLTQSRKNQ 230


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 376 DCHSLYTLYWFETEFTHYLSGLLL 305
           D H LYTL+W  +E   YL+G +L
Sbjct: 347 DRHHLYTLHW-TSEMGGYLAGFIL 369


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 497 MAAAERFKAPETTATGNDASTTGTTVA 577
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 497 MAAAERFKAPETTATGNDASTTGTTVA 577
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 379 SDCHSLYTLYWFETEFTHYLSGLLLTTRLFRF 284
           +D    + L W  T F H +S + +  RLF F
Sbjct: 184 ADIQCYFALSWLITWFAHDVSDISVVCRLFDF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,149
Number of Sequences: 5004
Number of extensions: 45994
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)