Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1967
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 127 8e-30
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087... 121 7e-28
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 30 2.3
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 29 3.9
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344... 29 3.9
03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184 29 5.2
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 28 6.9
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 9.1
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 127 bits (307), Expect = 8e-30
Identities = 68/143 (47%), Positives = 92/143 (64%)
Frame = +2
Query: 287 SKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEA 466
SKQSR EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEA
Sbjct: 75 SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134
Query: 467 KIEDLSTQATMAAAERFKAPETTATGNDASTTGTTVAPIAEXXXXXXXXXXXXXXXXXXX 646
KIEDLS+Q AA++F+ + + + AP E
Sbjct: 135 KIEDLSSQLQAQAAQQFRMQDLSKV--MSKPDAAAAAPADE---EEEVDETGIEPRDIDL 189
Query: 647 XMSQANVSRAKAVRALKNNQSDI 715
M+QA+VSRAKAV+ALK + DI
Sbjct: 190 VMTQASVSRAKAVKALKAHDGDI 212
>01_07_0123 +
41206782-41206844,41207701-41207782,41208587-41208717,
41208758-41209147
Length = 221
Score = 121 bits (291), Expect = 7e-28
Identities = 77/170 (45%), Positives = 95/170 (55%), Gaps = 19/170 (11%)
Frame = +2
Query: 263 AGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKN----------------- 391
AG D +SKQSR EKK+RK M KLG+K + GV RVTI+KSKN
Sbjct: 50 AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109
Query: 392 --ILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPETTATGNDASTTG 565
ILFVI+ PDV+K+P+SDTY++FGEAKIEDLS+Q AAE+FKAP D S
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAP-------DLSNVI 162
Query: 566 TTVAPIAEXXXXXXXXXXXXXXXXXXXXMSQANVSRAKAVRALKNNQSDI 715
+ P A M+QA VSR++AV+ALK DI
Sbjct: 163 SKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKALKAANGDI 212
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 438 QTPTLFLVKPRLKICPHRPPWLQLRDSRHQRPQPLA 545
Q P ++ +L P +PP LQ + HQ+PQP A
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQA 279
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 438 QTPTLFLVKPRLKICPHRPPWLQLRDSRHQRPQ--PLAMTLPQLERR 572
Q P + +L P +PP LQL+ H +PQ P PQL ++
Sbjct: 228 QLPQQLQPQSQLPPQPQQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQ 274
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 427 LVYIRRVDDKENVL*FSDCHSLYTLYWFETEFTHYLS 317
L I + ++K+N+L S +L + WF EF+H S
Sbjct: 176 LAQIVKAEEKDNMLRASTLQALSAMIWFMGEFSHISS 212
>01_01_0467 -
3446243-3446254,3446331-3446420,3446544-3446816,
3446898-3447066,3447579-3447646,3447890-3448074,
3448683-3448806
Length = 306
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 384 QRTFSLSSTRLMYTRILIQTPTLFLVKPRL 473
Q+ F +SST+L+Y Q TLF+V P L
Sbjct: 134 QKKFKVSSTQLLYQSCPYQALTLFIVGPFL 163
>03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184
Length = 259
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = +2
Query: 236 DAGGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSP 415
D G P+ D+ + Q RG+ I+ L LKP E + S + + S
Sbjct: 134 DLGEFVLPLFEEDVDIEDVQQRGQPDIPVIVQALTLKPFVQWEETSQSPSAEVNMAMTSL 193
Query: 416 DVYKN--PHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 529
D ++N D I + K+E + TM ++ +A E
Sbjct: 194 D-FENMLADRDRRIQYWRTKLEVAELKKTMVEVKKDQAVE 232
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 515 ISQLQPWWPVWTNLQSWLHQK 453
I QL PW P T SWL +K
Sbjct: 110 IKQLHPWIPSTTGRSSWLEEK 130
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 194 SHCQMMQSLLCASRS*RRWPCRVQSVLAS 108
S C +QSL+ ++ +RWP V S LAS
Sbjct: 422 SLCSSLQSLILSNNKIKRWPGTVFSSLAS 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,946,650
Number of Sequences: 37544
Number of extensions: 314969
Number of successful extensions: 879
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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