Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1966
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 370 e-103
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 370 e-103
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 297 4e-81
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 123 2e-28
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 123 2e-28
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 121 7e-28
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 81 9e-16
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 62 4e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 62 4e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 62 4e-10
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 60 2e-09
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 60 2e-09
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 40 0.002
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 40 0.002
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 33 0.18
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 1.7
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 2.9
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 29 5.1
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 29 5.1
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 370 bits (911), Expect = e-103
Identities = 176/240 (73%), Positives = 195/240 (81%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
ADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFT 168
Query: 181 EIKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 360
EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTL 228
Query: 361 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE 540
+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTE
Sbjct: 229 LEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTE 288
Query: 541 VKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPXGAADFTAQVIGLN 720
VKSVEMHHE+L EAVPGD ++RRG V DSK +P A F AQVI +N
Sbjct: 289 VKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMN 348
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = +3
Query: 720 HXGQISNGYXPVLDWHTGHIGXKF 791
H GQISNGY PVLD HT HI KF
Sbjct: 349 HPGQISNGYTPVLDCHTAHIACKF 372
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 370 bits (911), Expect = e-103
Identities = 176/240 (73%), Positives = 195/240 (81%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
ADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFT 168
Query: 181 EIKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 360
EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTL 228
Query: 361 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE 540
+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTE
Sbjct: 229 LEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTE 288
Query: 541 VKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPXGAADFTAQVIGLN 720
VKSVEMHHE+L EAVPGD ++RRG V DSK +P A F AQVI +N
Sbjct: 289 VKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMN 348
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = +3
Query: 720 HXGQISNGYXPVLDWHTGHIGXKF 791
H GQISNGY PVLD HT HI KF
Sbjct: 349 HPGQISNGYTPVLDCHTAHIACKF 372
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 297 bits (730), Expect = 4e-81
Identities = 139/201 (69%), Positives = 158/201 (78%)
Frame = +1
Query: 118 LIVXVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTK 297
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 298 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 477
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233
Query: 478 ETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAG 657
ETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGD ++RRG V
Sbjct: 234 ETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCS 293
Query: 658 DSKNNPPXGAADFTAQVIGLN 720
DSK +P A F AQVI +N
Sbjct: 294 DSKQDPAKEARTFHAQVIIMN 314
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = +3
Query: 720 HXGQISNGYXPVLDWHTGHIGXKF 791
H GQISNGY PVLD HT HI KF
Sbjct: 315 HPGQISNGYTPVLDCHTAHIACKF 338
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 123 bits (296), Expect = 2e-28
Identities = 69/181 (38%), Positives = 109/181 (60%), Gaps = 2/181 (1%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
AD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+
Sbjct: 272 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 329
Query: 181 EIKKEVSSYI-KKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC 357
EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ DG C
Sbjct: 330 EIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPC 374
Query: 358 LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAPANIT 534
L+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 375 LLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAA 434
Query: 535 T 537
T
Sbjct: 435 T 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 123 bits (296), Expect = 2e-28
Identities = 69/181 (38%), Positives = 109/181 (60%), Gaps = 2/181 (1%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
AD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+
Sbjct: 290 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 347
Query: 181 EIKKEVSSYI-KKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC 357
EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ DG C
Sbjct: 348 EIKNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPC 392
Query: 358 LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAPANIT 534
L+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 393 LLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAA 452
Query: 535 T 537
T
Sbjct: 453 T 453
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 121 bits (291), Expect = 7e-28
Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 2/241 (0%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
AD AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+
Sbjct: 211 ADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFK 270
Query: 181 EIKKEVSSYIKKIGYNPXA-VAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC 357
EI+ +++ +++K+G+NP + +VP SG G + + T W G C
Sbjct: 271 EIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSE--GNWY--------SGPC 320
Query: 358 LIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANIT 534
IE +D +LP R + P+R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 321 FIEFIDVLLPSYKRDFNGPVRCTVAEKY--SEMGTVIIGKMESGCVQKGDTLVVMPNKQP 378
Query: 535 TEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPXGAADFTAQVIG 714
+V + + V GD EL+ G++ + G F A+V+
Sbjct: 379 VQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAEVLV 437
Query: 715 L 717
L
Sbjct: 438 L 438
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 81.0 bits (191), Expect = 9e-16
Identities = 43/64 (67%), Positives = 48/64 (75%)
Frame = +1
Query: 1 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
ADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R +
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSD 165
Query: 181 EIKK 192
I++
Sbjct: 166 TIQR 169
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/74 (43%), Positives = 37/74 (50%)
Frame = +2
Query: 260 DGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYT 439
D TETTC C GSRDG + RK L E S +L PS H A LT VF + T
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCT 237
Query: 440 KSVVLVPCPSAELK 481
+S L P S L+
Sbjct: 238 RSEELEPSQSDVLR 251
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 62.1 bits (144), Expect = 4e-10
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 9/223 (4%)
Frame = +1
Query: 10 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK--QLIVXVNKMDSTEPPYSEPRFEE 183
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R E
Sbjct: 139 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 188
Query: 184 IKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 363
++ ++ + + GY + G + K P + G+ K L+
Sbjct: 189 VEMDIREQLNEFGYPGDTCPVI-----FGSALCALEGKQP---------EIGEEAVKQLL 234
Query: 364 EALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANIT 534
E LD ++P + ++P+ + VY I G GTV G++E G+LK G I +
Sbjct: 235 EVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDG 293
Query: 535 TEVKSV----EMHHEALQEAVPGDXXXXXXXXXXXXELRRGYV 651
T VKSV E + + +A PGD ++RRG V
Sbjct: 294 TTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 62.1 bits (144), Expect = 4e-10
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 9/223 (4%)
Frame = +1
Query: 10 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK--QLIVXVNKMDSTEPPYSEPRFEE 183
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R E
Sbjct: 140 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 189
Query: 184 IKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 363
++ ++ + + GY + G + K P + G+ K L+
Sbjct: 190 VEMDIREQLNEFGYPGDTCPVI-----FGSALCALEGKQP---------EIGEEAVKQLL 235
Query: 364 EALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANIT 534
E LD ++P + ++P+ + VY I G GTV G++E G+LK G I +
Sbjct: 236 EVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDG 294
Query: 535 TEVKSV----EMHHEALQEAVPGDXXXXXXXXXXXXELRRGYV 651
T VKSV E + + +A PGD ++RRG V
Sbjct: 295 TTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 62.1 bits (144), Expect = 4e-10
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 9/223 (4%)
Frame = +1
Query: 10 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK--QLIVXVNKMDSTEPPYSEPRFEE 183
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R E
Sbjct: 140 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 189
Query: 184 IKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 363
++ ++ + + GY + G + K P + G+ K L+
Sbjct: 190 VEMDIREQLNEFGYPGDTCPVI-----FGSALCALEGKQP---------EIGEEAVKQLL 235
Query: 364 EALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANIT 534
E LD ++P + ++P+ + VY I G GTV G++E G+LK G I +
Sbjct: 236 EVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDG 294
Query: 535 TEVKSV----EMHHEALQEAVPGDXXXXXXXXXXXXELRRGYV 651
T VKSV E + + +A PGD ++RRG V
Sbjct: 295 TTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 60.1 bits (139), Expect = 2e-09
Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 5/223 (2%)
Frame = +1
Query: 4 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEE 183
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 184 IKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC-- 357
++ E + G+N A P +G + EG+ D C
Sbjct: 182 VEMEARELLSLHGFNGDAT--------------------PVIRGSALSALEGQ-DISCIE 220
Query: 358 -LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PAN 528
LI+ALD++ P R +P+ I G GTV VG +E GVLK G V
Sbjct: 221 RLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQT 280
Query: 529 ITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAG 657
+ T +++ ++++E GD ++RG AG
Sbjct: 281 LQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 60.1 bits (139), Expect = 2e-09
Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 5/223 (2%)
Frame = +1
Query: 4 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEE 183
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 184 IKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC-- 357
++ E + G+N A P +G + EG+ D C
Sbjct: 182 VEMEARELLSLHGFNGDAT--------------------PVIRGSALSALEGQ-DISCIE 220
Query: 358 -LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PAN 528
LI+ALD++ P R +P+ I G GTV VG +E GVLK G V
Sbjct: 221 RLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQT 280
Query: 529 ITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAG 657
+ T +++ ++++E GD ++RG AG
Sbjct: 281 LQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 40.3 bits (90), Expect = 0.002
Identities = 47/174 (27%), Positives = 74/174 (42%)
Frame = +1
Query: 70 QTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPXAVAFV 249
QT EH LLA ++I+ +NK D E + + E K+V +K +G + +
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENS---- 163
Query: 250 PISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQ 429
PI +E S +FK +E + K IE+ I P R + + +
Sbjct: 164 PI--------VEMSLADGYFK------EEMLQNLKLAIES--RIFEPKRDEEGEFLIAID 207
Query: 430 DVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 591
+ I G GTV G V GVL+ T + F N VK++E + + + G
Sbjct: 208 HCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAG 261
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 40.3 bits (90), Expect = 0.002
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 9/227 (3%)
Frame = +1
Query: 67 GQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPXAVAF 246
G T+EH LA +L V +V V K+D E + I + V S KK+
Sbjct: 267 GTTKEHLSLALSLHVPVYLV-VTKIDMCPANILEETMKNITRLVRS-AKKL--------- 315
Query: 247 VPISGWHGDNMLEPSTKMPWFKG---WQVERKEGKADGKCLIEALDAILPPARPTDK--P 411
PI + D+++ + P K +QV EG L+ I+P R ++ P
Sbjct: 316 -PILVRNMDDVVHAAVNFPSKKVCPIFQVSNVEGT--NLPLLRQFLNIVPLRRQLNENDP 372
Query: 412 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQE 579
+ D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 373 AHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGI 432
Query: 580 AVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPXGAADFTAQVIGLN 720
G ++R+G V D K P + F A+++ L+
Sbjct: 433 VKCGQSASFALKKIPKKDVRKGMVLVDPKVK-PVASMVFEAEILVLH 478
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 39.9 bits (89), Expect = 0.002
Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 7/225 (3%)
Frame = +1
Query: 67 GQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPXAVAF 246
G T+EH LA +L V +V V K+D P Y EE K ++ ++ P V
Sbjct: 268 GTTKEHLSLALSLHVPVYLV-VTKIDMC-PAYI---LEETMKNITRLVRSAKKLPILVRN 322
Query: 247 VPISGWHGDNMLEPSTKM-PWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK--PLR 417
+ N PS K+ P F QV EG L+ ++P R ++ P
Sbjct: 323 MDDCVHAAVNF--PSKKVCPIF---QVSNVEGT--NLPLLRQFLNMVPLRRQLNENDPAH 375
Query: 418 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQEAV 585
+ D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 376 FQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVK 435
Query: 586 PGDXXXXXXXXXXXXELRRGYVAGDSKNNPPXGAADFTAQVIGLN 720
G ++R+G V D K P + F A+++ L+
Sbjct: 436 CGQSASFALKKIPKKDVRQGMVLVDPKVK-PVASMVFEAEILVLH 479
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 35.9 bits (79), Expect = 0.034
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Frame = +1
Query: 409 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQ 576
P ++++Y + +G V G + G L G V+ P T V S+ +A+
Sbjct: 402 PAFFTIEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVG 461
Query: 577 EAVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPXGAADFTAQVIGLNXLXKSQTGTHQS 756
PG+ LRRG V + + PP +FTA ++ L K Q+
Sbjct: 462 CVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCHSTKYICEGFQA 520
Query: 757 --WIGTLATLA 783
+IG++ T A
Sbjct: 521 TVFIGSVCTTA 531
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +1
Query: 379 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 558
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 559 HHEALQEAVPG 591
+ + + G
Sbjct: 210 WKQRVGQVAAG 220
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 137 LFTXTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 9
LF T+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 493 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 594
KPGTI F P ITTE K H L+ + GD
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGD 389
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -1
Query: 572 RASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGR 393
R + +S++ +S+ L + ++ TP TGT PIP +++ + + V +
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVHK 273
Query: 392 AG---GRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNML 273
G + + + H ++L S++ C + + G N++
Sbjct: 274 EGCPKNKKKNLGPIEH-SNSLISVKQPCKVHANQLPISGINLM 315
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -1
Query: 572 RASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGR 393
R + +S++ +S+ L + ++ TP TGT PIP +++ + + V +
Sbjct: 214 RKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVHK 273
Query: 392 AG---GRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNML 273
G + + + H ++L S++ C + + G N++
Sbjct: 274 EGCPKNKKKNLGPIEH-SNSLISVKQPCKVHANQLPISGINLM 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.134 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,732,982
Number of Sequences: 27780
Number of extensions: 405550
Number of successful extensions: 877
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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