Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1964
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    29   0.99 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    23   3.0  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    27   4.0  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    26   5.3  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   7.0  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.2  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   9.2  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 183 VRVIATLISP-FPSRRRHLELSSFEYRFVCNPESLSLHN 70
           ++ I +LI P FP  ++HL  S FE  F    E +SL N
Sbjct: 568 MQTIESLIHPRFPPLQKHLSPSEFENTFESRFEPVSLEN 606


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.4 bits (48), Expect(2) = 3.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 484 FVVSLPDEERVAWMWAILAAFAIPELGTMIRSIRICFFKTSKK 612
           F++ L      +  WAI  AF    L ++I +  I F+++  K
Sbjct: 394 FIILLSSNSHYSQFWAIFQAFVWRFLHSIIHAF-ILFYQSKSK 435



 Score = 21.8 bits (44), Expect(2) = 3.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 247 KGWDVFREFPPKQDSVSMETQKCLEFTVRMLKVVAYLVTFIVVLGS 384
           +G D   E PP+ D V          +   L ++A    FI++L S
Sbjct: 355 RGEDNEFELPPEHDLVGFVNFDFTRISDVALLIIALYSIFIILLSS 400


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 448 EFCNKNLSRDKQFVVSLPD 504
           EF N NL  +KQ V +LPD
Sbjct: 194 EFKNSNLEPEKQIVTALPD 212


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 154 RRDEGSDNSDDELTPLANEIYGGSQRTVQETKGWDVFREFPPK 282
           R   G D S   ++ + +  Y     TV+  K WDV R  PPK
Sbjct: 38  REKFGKDISQPSVSQILSSKYSYLDNTVE--KPWDVKRNRPPK 78


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 150 PSRRRHLELSSFEYRFVCNP-ESLSLHNVKVR 58
           P   RH ++  FE++ V  P ES    NVK+R
Sbjct: 94  PGEMRHAQMFEFEFKHVDKPYESYIGKNVKLR 125


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 520 RQHAPRLVNSPQTAYLDLSFYC 455
           R+  PRL   PQT + DL   C
Sbjct: 216 RRQGPRLYEIPQTGFYDLVLKC 237


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 280 KQDSVSMETQ-KCLEFTVRMLKVVAYLVTFIVVLGSGVI 393
           K+  VS++T+ KC+  ++R L+   + VTF+ V  +G+I
Sbjct: 188 KKHLVSVQTEHKCVLDSLRALQEEGFEVTFLPVQTNGLI 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,353
Number of Sequences: 5004
Number of extensions: 58900
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)