Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1964
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0311 - 24309411-24309525,24309627-24309841                       31   0.78 
09_01_0019 + 403078-404211                                             31   1.0  
11_06_0248 + 21680237-21680392,21680450-21681141,21681397-216817...    29   5.5  
08_02_0628 + 19459198-19459674,19459751-19459894,19460191-194604...    29   5.5  
12_01_0585 - 4774877-4775008,4775150-4775308,4776030-4776131,477...    28   7.2  
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334...    28   9.6  
04_04_0725 - 27581658-27581663,27582379-27582481,27582697-275830...    28   9.6  
04_03_0911 + 20767041-20767047,20767119-20769322                       28   9.6  
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325...    28   9.6  

>04_04_0311 - 24309411-24309525,24309627-24309841
          Length = 109

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 260 CSENFRRNRTVCPWRLRNVWNS 325
           C +  R  R +C WR RN+W S
Sbjct: 59  CVQRMRARRELCSWRTRNLWGS 80


>09_01_0019 + 403078-404211
          Length = 377

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 127 FKMATSGGKRRDEGSDNSDDE 189
           F+  TSGGK  DEGSD+ D++
Sbjct: 156 FRKKTSGGKDADEGSDDEDED 176


>11_06_0248 + 21680237-21680392,21680450-21681141,21681397-21681724,
            21681945-21682801,21682928-21683378,21683761-21684066,
            21684136-21684456,21684539-21684745,21685568-21685810
          Length = 1186

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 707  CFYSNVAFNIVDLSXSFH*LLVLTXENC--TKLGFFDVLKKHILIDLIIVPNSGIAKAAR 534
            C+  N++  ++  + SF     +       T +G FD  +   L DL++  +S  +K   
Sbjct: 874  CYAGNLSIAVIQANNSFKEQYRVESSQPFGTVIGIFDGHEAPKLPDLLVTTSSSTSKLFG 933

Query: 533  IAHIQATRSSSGKLTTNCLSR 471
            +  +    SSS ++TT+ +S+
Sbjct: 934  LICVCRELSSSQRVTTDAISK 954


>08_02_0628 +
           19459198-19459674,19459751-19459894,19460191-19460431,
           19460616-19461116,19461226-19461635
          Length = 590

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 282 TGQCVHGDSEMFGIHSANVKSGRLPGHLHRGP 377
           T   +HG +E    +  N++ G LPGHL R P
Sbjct: 58  TSTLMHGSAEGRANYFGNLQKGVLPGHLGRLP 89


>12_01_0585 -
           4774877-4775008,4775150-4775308,4776030-4776131,
           4776480-4776485,4776655-4777008
          Length = 250

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 492 EFTRRGACCLDVGYPSC 542
           EF RRG  CLD G P C
Sbjct: 154 EFIRRGVVCLDGGDPEC 170


>11_06_0606 +
           25432471-25432517,25433098-25433173,25433272-25433448,
           25433576-25433653,25433749-25433853,25434042-25434108,
           25434219-25434280,25434371-25434510,25434717-25434843,
           25434917-25435031,25435220-25435308,25435699-25435782,
           25435961-25436737
          Length = 647

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 309 EMFGIHSANVKSGRLPGHLH 368
           +MFG     +K GRL GHLH
Sbjct: 3   KMFGFSRRRMKLGRLKGHLH 22


>04_04_0725 -
           27581658-27581663,27582379-27582481,27582697-27583025,
           27583263-27583365,27583490-27583671,27584135-27584324,
           27584570-27584665,27584960-27585054,27585396-27585590
          Length = 432

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 162 ISPFPSRRRHLELSSFEYRFVCNPESLSLHNVKVRVRVHS 43
           + P   RRR L+L+ F+YR + N     L  ++ RV  H+
Sbjct: 184 VLPILMRRRALQLTKFDYR-LTNELDEELQKLRCRVNFHA 222


>04_03_0911 + 20767041-20767047,20767119-20769322
          Length = 736

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 480 AVCGEFTRRGACCLDVGYPSCLCYSG 557
           A CG FT     C D+ +PSC C  G
Sbjct: 241 AFCGPFT----VCNDITFPSCTCMKG 262


>01_01_0429 +
           3254291-3254435,3254902-3255210,3255286-3256747,
           3256950-3257577
          Length = 847

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 526 TSRQHAPRLVNSPQTAYLDLSF 461
           T+ + +P LVN    AYLDLSF
Sbjct: 197 TTLEQSPSLVNMSNLAYLDLSF 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,900,227
Number of Sequences: 37544
Number of extensions: 392380
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)