Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1964
(781 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF057170-1|AAC64344.1| 435|Homo sapiens bestrophin protein. 33 1.2
X78710-1|CAA55363.1| 753|Homo sapiens metal-regulatory transcri... 31 3.5
X91196-2|CAA62603.1| 1369|Homo sapiens A-T protein. 31 6.1
U82828-2|AAB65827.1| 3056|Homo sapiens ATM protein. 31 6.1
U55757-1|AAB38309.1| 3056|Homo sapiens ataxia-telangiectasia pro... 31 6.1
AY220758-1|AAO26044.1| 2756|Homo sapiens ataxia telangiectasia m... 31 6.1
BX537615-1|CAD97800.1| 917|Homo sapiens hypothetical protein pr... 30 8.1
BC146763-1|AAI46764.1| 1006|Homo sapiens myosin ID protein. 30 8.1
BC030796-1|AAH30796.2| 163|Homo sapiens MYO1D protein protein. 30 8.1
AB018270-1|BAA34447.2| 1010|Homo sapiens KIAA0727 protein protein. 30 8.1
>AF057170-1|AAC64344.1| 435|Homo sapiens bestrophin protein.
Length = 435
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 198 PGERNIWWKSAHSTRNERMGRVQR-ISAETGQC 293
PG R +WW+S+ ST ERM + R TG C
Sbjct: 351 PGRRRLWWQSSSSTPLERMMMILRPTGLSTGIC 383
>X78710-1|CAA55363.1| 753|Homo sapiens metal-regulatory
transcription factor protein.
Length = 753
Score = 31.5 bits (68), Expect = 3.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = -2
Query: 141 RRHLELSSFEYRFVCNPES-----LSLHNVKVRVRVHSR 40
R H + EY FVCN E L+ H++++ VRVH++
Sbjct: 158 RTHQKTHRGEYTFVCNQEGCGKAFLTSHSLRIHVRVHTK 196
>X91196-2|CAA62603.1| 1369|Homo sapiens A-T protein.
Length = 1369
Score = 30.7 bits (66), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 525 VGYPSCLCYSGIRNDDQVYKNMLLQNIKEAEFC 623
VG C CY G+ +++ YK+ L Q K C
Sbjct: 723 VGVLGCYCYMGVIAEEEAYKSELFQKAKSLMKC 755
>U82828-2|AAB65827.1| 3056|Homo sapiens ATM protein.
Length = 3056
Score = 30.7 bits (66), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 525 VGYPSCLCYSGIRNDDQVYKNMLLQNIKEAEFC 623
VG C CY G+ +++ YK+ L Q K C
Sbjct: 723 VGVLGCYCYMGVIAEEEAYKSELFQKAKSLMQC 755
>U55757-1|AAB38309.1| 3056|Homo sapiens ataxia-telangiectasia
protein.
Length = 3056
Score = 30.7 bits (66), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 525 VGYPSCLCYSGIRNDDQVYKNMLLQNIKEAEFC 623
VG C CY G+ +++ YK+ L Q K C
Sbjct: 723 VGVLGCYCYMGVIAEEEAYKSELFQKAKSLMQC 755
>AY220758-1|AAO26044.1| 2756|Homo sapiens ataxia telangiectasia
mutated (includes complementation groups A, C and D)
protein.
Length = 2756
Score = 30.7 bits (66), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 525 VGYPSCLCYSGIRNDDQVYKNMLLQNIKEAEFC 623
VG C CY G+ +++ YK+ L Q K C
Sbjct: 723 VGVLGCYCYMGVIAEEEAYKSELFQKAKSLMQC 755
>BX537615-1|CAD97800.1| 917|Homo sapiens hypothetical protein
protein.
Length = 917
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 186 IVRVIATLISPFPSRRRHLELSSFEYRFVCNPESLSLHNVKVRVRVHSR 40
I ++ L++ F S +RHL+++ V NP SLH K V V +R
Sbjct: 853 IGELVGVLVNHFKSEKRHLQVN------VTNPVQCSLHGKKCTVSVETR 895
>BC146763-1|AAI46764.1| 1006|Homo sapiens myosin ID protein.
Length = 1006
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 186 IVRVIATLISPFPSRRRHLELSSFEYRFVCNPESLSLHNVKVRVRVHSR 40
I ++ L++ F S +RHL+++ V NP SLH K V V +R
Sbjct: 942 IGELVGVLVNHFKSEKRHLQVN------VTNPVQCSLHGKKCTVSVETR 984
>BC030796-1|AAH30796.2| 163|Homo sapiens MYO1D protein protein.
Length = 163
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 186 IVRVIATLISPFPSRRRHLELSSFEYRFVCNPESLSLHNVKVRVRVHSR 40
I ++ L++ F S +RHL+++ V NP SLH K V V +R
Sbjct: 99 IGELVGVLVNHFKSEKRHLQVN------VTNPVQCSLHGKKCTVSVETR 141
>AB018270-1|BAA34447.2| 1010|Homo sapiens KIAA0727 protein protein.
Length = 1010
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 186 IVRVIATLISPFPSRRRHLELSSFEYRFVCNPESLSLHNVKVRVRVHSR 40
I ++ L++ F S +RHL+++ V NP SLH K V V +R
Sbjct: 946 IGELVGVLVNHFKSEKRHLQVN------VTNPVQCSLHGKKCTVSVETR 988
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,288,194
Number of Sequences: 237096
Number of extensions: 1986198
Number of successful extensions: 4591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4591
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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