Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1964
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...   101   8e-22
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...   101   8e-22
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        28   6.5  

>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
           2 protein.
          Length = 1668

 Score =  101 bits (241), Expect = 8e-22
 Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
 Frame = +1

Query: 232 TVQETKGWDVFREFPPKQDSVSMETQKCLEFTVRMLKVVAYLVTFIVVLGSGVIAKGTIL 411
           TV E KGWD+FR  PPK D +        + ++++LK+  +LV F++ LGS V+AK T +
Sbjct: 85  TVTENKGWDIFRLLPPKPDRLGHGFWH--DASLQVLKLATFLVLFLLTLGSAVVAKSTFI 142

Query: 412 FMTSQIR-KDKRLEFCNKNLSRDKQFVVSLPDEERVAWMWAILAAFAIPELGTMIRSIRI 588
            MTS I    + +  CN+ +S   Q  V L +   V W+WA L A + PE    +RS+  
Sbjct: 143 LMTSAIGWGGQTITICNQVISEATQNTVKLKNAHVVKWVWATLLALSAPEALCFVRSMHR 202

Query: 589 CFFKTSKKPSFVQFSXV 639
             F+  K+P+F+QF  V
Sbjct: 203 TMFRNVKRPTFIQFVFV 219


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
           protein 2 protein.
          Length = 1668

 Score =  101 bits (241), Expect = 8e-22
 Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
 Frame = +1

Query: 232 TVQETKGWDVFREFPPKQDSVSMETQKCLEFTVRMLKVVAYLVTFIVVLGSGVIAKGTIL 411
           TV E KGWD+FR  PPK D +        + ++++LK+  +LV F++ LGS V+AK T +
Sbjct: 85  TVTENKGWDIFRLLPPKPDRLGHGFWH--DASLQVLKLATFLVLFLLTLGSAVVAKSTFI 142

Query: 412 FMTSQIR-KDKRLEFCNKNLSRDKQFVVSLPDEERVAWMWAILAAFAIPELGTMIRSIRI 588
            MTS I    + +  CN+ +S   Q  V L +   V W+WA L A + PE    +RS+  
Sbjct: 143 LMTSAIGWGGQTITICNQVISEATQNTVKLKNAHVVKWVWATLLALSAPEALCFVRSMHR 202

Query: 589 CFFKTSKKPSFVQFSXV 639
             F+  K+P+F+QF  V
Sbjct: 203 TMFRNVKRPTFIQFVFV 219


>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 197 PWRTKYMVEVSAQYKKRKDGTCSENFRRNRTV 292
           P++T++   +S  YK+R +GT   +FR +  V
Sbjct: 848 PFKTEFCTALSKAYKERTNGTLHLDFRSSHVV 879


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 197 PWRTKYMVEVSAQYKKRKDGTCSENFRRNRTV 292
           P++T++   +S  YK+R +GT   +FR +  V
Sbjct: 785 PFKTEFCTALSKAYKERTNGTLHLDFRSSHVV 816


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,361,336
Number of Sequences: 27780
Number of extensions: 341916
Number of successful extensions: 1000
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)