Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1962
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    30   0.44 
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   1.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    26   5.4  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    26   5.4  
SPAC1486.08 |||mitochondrial inner membrane protein involved in ...    26   5.4  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   7.2  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   7.2  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   9.5  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   9.5  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 129 LSTNHHSGKFSAPGTITCHIR-MKL*MNGFPT 221
           LS+ HHSGKF  P  I C    MK  +N F T
Sbjct: 316 LSSLHHSGKFQKPALIVCPATLMKQWVNEFHT 347


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 YFDQDKPCELQCVPRDGTDVEMLGGFVAD 304
           YFD+ +P   +CVP+D   +  L   +AD
Sbjct: 10  YFDKSRPRRFRCVPKDKAILNPLAKNIAD 38


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 500 EVAIIPAGSRNVKIQEKVSPGNYISI 577
           E+A+ P  + N K+Q+ VSP N  +I
Sbjct: 250 ELALFPHSAHNQKVQDDVSPLNDFAI 275


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 674 NRDWGKSSNIGTARRNIKIYQRXFPRTTSXPWR 772
           ++ WG+S  IG A    +I  R F   T   WR
Sbjct: 288 HKGWGQSIVIGVAAAGQEISTRPFQLVTGRVWR 320


>SPAC1486.08 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Cox16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 226 IKVGNPFIYSFILIWHVIVP 167
           I VG PF+ S +L+W  ++P
Sbjct: 20  IYVGLPFLSSVLLVWSCLIP 39


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 497 SEVAIIPAGSRNV-KIQEKVSPGNYISIGSTKSRXMFLNGARNATLTEYFVAGAQAXYXR 673
           SEV   P   R V ++ E +    Y+S   + S       AR ATL E     +Q  Y R
Sbjct: 72  SEVDDHPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDR 131

Query: 674 NRDWGKSSN 700
             +  K S+
Sbjct: 132 VTNTEKMSH 140


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 211 PFIYSFILIWHVIVPGALNF 152
           PF+ SF+L++ VI  G  NF
Sbjct: 324 PFMLSFLLVFWVIFEGVCNF 343


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
 Frame = -2

Query: 241 ARFILIKVGNPFIY--SFI 191
           ARFI +KV NPF++  SFI
Sbjct: 434 ARFICLKVQNPFVFHHSFI 452


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 416 GVCGGDGTACKTVQGIYTKGTTRQSGFSEVAIIPAGSRNVKIQE 547
           G+ GG G+   T+  I  K    + G   V IIP    +  ++E
Sbjct: 33  GLAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMDGFHYSLEE 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,186
Number of Sequences: 5004
Number of extensions: 71952
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)