Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1962
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869     47   2e-05
07_02_0025 - 11939976-11940158,11941166-11941378,11943191-119433...    30   1.9  
11_02_0071 - 8009785-8010012,8010456-8010974,8011429-8011611           29   3.3  
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117...    29   4.3  
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    29   5.7  
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886...    29   5.7  
11_06_0720 - 26617665-26617781,26617851-26617924,26618218-266183...    28   7.5  
08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301...    28   7.5  
01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054...    28   7.5  

>01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869
          Length = 400

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
 Frame = +2

Query: 290 GFVADGTPCRQAIGSRDMCISGV------CYKV---GCDWIVDSDVEEDACGVCGG-DGT 439
           G   DG    + + SRD+ ISGV       Y V   GC+ +   D    A G     DG 
Sbjct: 143 GGCPDGATSMKVLNSRDVVISGVKSVNSELYHVVIDGCEGVAVQDARIVAPGSSPNTDGI 202

Query: 440 ACKTVQGIYTKGTTRQSGFSEVAIIPAGSRNVKIQE-KVSPGNYISIGSTKSRXMFLNGA 616
             ++   +   G + Q+G   +++ P G+ N++++     PG+ ISIGS   +     G 
Sbjct: 203 HVQSSSAVTITGASIQTGDDCISVGP-GTSNLRVEHVSCGPGHGISIGSL-GKESEEGGV 260

Query: 617 RNATLTEYFVAGAQAXYXRNRDWGKSSNIGTARRNIKIYQRXFPRTTSXP 766
            N T++     G +    R + WG+++  G   R + +++    R  S P
Sbjct: 261 ENVTVSGAAFVGTENG-LRIKTWGRAARSGAYVRGV-VFEHALMRDVSNP 308


>07_02_0025 -
           11939976-11940158,11941166-11941378,11943191-11943323,
           11943522-11943741,11944083-11944182,11944526-11944659,
           11944781-11944949
          Length = 383

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 273 TWRCWEDSSQTVLLADKRSGRGTCAFLVCATK*VVIGLL 389
           TWR WED     LL     G  T + L  AT  + +GLL
Sbjct: 253 TWRLWEDGRNLELLDPAVRGECTASELEQATTCIQVGLL 291


>11_02_0071 - 8009785-8010012,8010456-8010974,8011429-8011611
          Length = 309

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 431 DGTACKTVQGIYTKGTTRQSGFSEVAIIPAGSRNVKIQE-KVSPGNYISIGSTKSRXMFL 607
           DG      + +     T ++G   V++ P G+  V I+  +  PG+ ISIGS   R    
Sbjct: 111 DGIHVALSRDVAVLSATVRTGDDCVSVGP-GTSGVAIRNIRCGPGHGISIGSLGGR-AGE 168

Query: 608 NGARNATLTEYFVAGAQAXYXRNRDWGK 691
              RN T+    +AG Q    R + WGK
Sbjct: 169 GEVRNVTVESASLAGTQNG-LRIKTWGK 195


>10_01_0097 -
           1171949-1172047,1172520-1172591,1172791-1172949,
           1172998-1173381,1173478-1175253,1175329-1175452,
           1176859-1177027,1177131-1177226,1177339-1177527,
           1177965-1179303
          Length = 1468

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +2

Query: 119 DPCPINEPSFREVQCSRHNNMPYKNETIDEWVPYFDQDK------PCELQCVPRDGTDVE 280
           D  P+N+ S    + +  NNM Y++ +++  +     DK        ELQCVP+     E
Sbjct: 403 DQKPVNKRSLVSKKQTPANNMQYQDTSVERLIREVTSDKFWHNPEEAELQCVPKSFESAE 462


>06_03_1313 -
           29252335-29252446,29253430-29253671,29253770-29253848,
           29254991-29255130,29255262-29255571,29255810-29255952,
           29256106-29256306,29256453-29256581,29256921-29257199,
           29258036-29259720,29261255-29261764,29261901-29262108,
           29264347-29264458,29264594-29264763
          Length = 1439

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 35  SRECNNPEPVNNGNYCIGDRSRYKVCNTDPCPINEPSFREVQCSRHNNMPYKN 193
           ++ C +P      +YC  DR R  V +   C I + S+R  + S+  +  YKN
Sbjct: 625 AKSCTSPPGSCKSSYC--DRVRELVVHLTDCQIKDCSYRHCRESKMVSDHYKN 675


>04_04_0666 +
           27086568-27086975,27087073-27087477,27088542-27088635,
           27088731-27088768,27088853-27088999,27089167-27089266,
           27090001-27090953,27091512-27091569,27092904-27093022
          Length = 773

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 419 VC-GGDGTACKTVQGIYTKGTTRQSGFSEVAIIPAGSRN 532
           VC GGDG   +   G+ ++    ++    V IIPAGS N
Sbjct: 305 VCVGGDGIVNEVFNGLLSRSDRAEAVSIPVGIIPAGSDN 343


>11_06_0720 -
           26617665-26617781,26617851-26617924,26618218-26618331,
           26619375-26619399,26619564-26619620,26620273-26622888
          Length = 1000

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 413 CGVCGGDGTACKTVQGIYTKGTTRQSGFSEVAIIPAGSR 529
           C  CG DGTA + ++G+  +G    SGF+  +++ A  R
Sbjct: 16  CVRCGRDGTAFEMLRGMRERGVP-LSGFALASLVTACER 53


>08_01_0341 +
           3011238-3011246,3011824-3012192,3012412-3012505,
           3012594-3012631,3012862-3013008,3013912-3014011,
           3014615-3015042,3015234-3015389
          Length = 446

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +2

Query: 386 VDSDVEEDACGVCGGDGTACKTVQGIYTKGTTRQSGFSEVAIIPAGSRNVKIQEKVSPGN 565
           VD     D     GGDG   + + G+  +    ++    + IIPAGS N  +   +   +
Sbjct: 150 VDLSTCPDGIICVGGDGIVNEVLNGLLGRDDLEEAIQLPIGIIPAGSENSLVWTVLGIRD 209

Query: 566 YISIGSTKSR 595
            +S  +T ++
Sbjct: 210 PVSAATTLAK 219


>01_06_0474 +
           29604201-29604527,29604634-29604988,29605071-29605411,
           29606502-29606940,29607558-29607913
          Length = 605

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 377 DWIVDSDVEEDACGVCGGDGTACKTVQGIYTKGTTRQSGF 496
           D  +D+D+ E+   VC GDG A     G Y +G  R+ GF
Sbjct: 254 DDTIDADMVEEMRAVCDGDG-AAPMEMGYYRQG--REVGF 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,260,592
Number of Sequences: 37544
Number of extensions: 491760
Number of successful extensions: 1287
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)