Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1961
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    31   0.18 
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   2.9  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    27   2.9  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    26   6.6  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   6.6  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    26   6.6  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 6   LTWWLPVVIVREDNLDFSKTTPL-VWMKNVKELTINDMPTKDK 131
           + WWLP V  +E     S   PL  WMK +    I  +   DK
Sbjct: 273 IPWWLPAVASKEHRKSLSSFIPLPKWMKTLSPQRIGFLTPADK 315


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 39  EDNLDFSKTTPLVWMKNVKELTINDMPTKDKFIIINPEEIAPYLVNYDKD 188
           +DN D+ +   L WMKN     + ++ T +   I N E +  +L+N + D
Sbjct: 472 QDNKDYRRI--LGWMKNNWLPVLPELRTSNSKEIFNDESVVLFLLNPELD 519


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 225 FHSAGTWIRDTKCP 184
           FHS GTW  D  CP
Sbjct: 300 FHSGGTWWLDVSCP 313


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 168 LVNYDKDTWYLLSKFLQSEKRTQI-PAITRAKLLHDAWNLAYAGELSFATALNMTLFLKT 344
           LV  D   W  + +FLQ E  TQI P +   ++L +   + +   ++  TAL + L   T
Sbjct: 131 LVRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKI-WQNHVNSQTALPLELTWTT 189

Query: 345 EEDHL 359
              +L
Sbjct: 190 GNPNL 194


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 154 SSGLIIMNLSLVGISLIVNSFTFFIQTNGVVLLKSRLSSLTITTGS 17
           SSG  I +LS   +SL+     FF      V+LKSR+S+  +T  S
Sbjct: 50  SSGPFI-SLSFWFLSLVRGFVCFFFMFPYFVMLKSRMSTQKVTKQS 94


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 111 DMPTKDKFIIINPEEIAPYLVNYDKDTWYLLSKFL 215
           +M  KDKFI+  P  I  ++V   +   ++ S+F+
Sbjct: 95  EMLIKDKFIVFQPAHIKSWMVMLLRGLHHIHSRFI 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,117
Number of Sequences: 5004
Number of extensions: 57920
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)