Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1961
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406     29   3.0  
02_02_0457 + 10503801-10507358                                         29   5.2  
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928     28   6.9  

>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
          Length = 351

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 285 PNSMRRVKVWLGL*LGSVCAFHSAGTWIR 199
           P   RR+K+W  L   S C+  SA  W R
Sbjct: 275 PGCFRRIKIWSSLSSSSSCSRRSAARWRR 303


>02_02_0457 + 10503801-10507358
          Length = 1185

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 213  LQSEKRTQIPAITRAKLLHDAWNLAYAGELSFATALNMTLFLKTEEDHLVWEAVFPML 386
            L   +   IP + + KL++ +WNL    E    T+L  +L+  T     VW + FP L
Sbjct: 921  LNDPQSLSIPTLKKLKLIN-SWNLLGDIECCSLTSLVFSLWHVTSIPLHVWSSSFPAL 977


>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
          Length = 839

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 75  VWMKNVKELTINDMPTKDKFIIINPEEIAPYLVNYDKD 188
           +W +NV+EL+ N   + DKF++      AP+ ++  +D
Sbjct: 23  LWARNVRELSYNIEDSIDKFMVRIDTHAAPHKLHSFRD 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,603,763
Number of Sequences: 37544
Number of extensions: 389095
Number of successful extensions: 882
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)