Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1960
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    28   0.39 
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    27   1.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   2.1  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   4.9  
SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|c...    24   8.5  

>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 97  LDRYHTDPNVFVR*LSRISADTSIC 171
           L+RYH   N+F++ L +     S+C
Sbjct: 706 LERYHASANIFIQMLRKTDVSNSVC 730


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 246 LIVTHYIYSLYTSTVYFIYFIIDF*ALLNCVYVI 347
           LI T   +S   S V+++  ++D   L NC+YV+
Sbjct: 186 LIQTSLHHSSDNSLVFYLEMLLDSLDLRNCIYVV 219


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 68  FQ*NQEYLIVLIDIIRIQMCLYVSCQEFQQIRLSVG*E*NYFLDHSRHTRIMFRR 232
           F    +Y+ V + ++R+Q+    + +EF  + L +    + +L  S+   I+FR+
Sbjct: 296 FDLTSQYVKVKLKMLRLQIANKKNSEEFSTLNLQLESITSQYLFSSKEAEIVFRK 350


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 150 FSRYVYLLDENKTIF*ITLDILVLCLDDIFVALIVTHYIYSLYTSTVYFIY 302
           F +Y  LLD + +   +   +L+  L   +  L  TH + +LYTS+  ++Y
Sbjct: 498 FEKYC-LLDHSTSTISLFFGLLIFTLKSAYGYL--THRLSALYTSSENWVY 545


>SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 138

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 183 YSHPTDRRIC*NS*QLTY 130
           YS+PTD R C NS  L +
Sbjct: 113 YSNPTDERHCINSASLEF 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,167
Number of Sequences: 5004
Number of extensions: 20205
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)