Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1960
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical
           protein F25E2.1 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
 Frame = +3

Query: 135 LVVKNFSRYVYLLDENKT-IF*ITLDILVLCLDDIFVALIVTH-------YIYSLYTSTV 290
           L + N S Y       ++ IF I LD L +C+  +++  +V H       YI++  T+  
Sbjct: 136 LALSNASLYSTCFGGRRSLIFCIFLDFLPVCI--LYLICVVEHDVAKVLFYIFAFITTLA 193

Query: 291 YFIYFIIDF 317
           YF+ F  ++
Sbjct: 194 YFVAFTTNY 202


>Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.2 protein.
          Length = 336

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +3

Query: 114 GSKCVCTLVVKNFSRYVY-LLDENKTIF*ITLDILVLCLDDIFVALIVTHYIYSLYTSTV 290
           G  C+     K  S   + L +   T F + L +  LC   IFV ++  + +  +   T 
Sbjct: 38  GGYCILLKTPKEMSSVKWSLFNLQFTSFVLDLTLSFLCTAYIFVPVMAGYGVGIVDIDTA 97

Query: 291 YFIYFIIDF*ALLNCVYVI 347
            + Y I+    +  C  V+
Sbjct: 98  KYAYIIVTVVFITGCAIVV 116


>Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.1 protein.
          Length = 336

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +3

Query: 114 GSKCVCTLVVKNFSRYVY-LLDENKTIF*ITLDILVLCLDDIFVALIVTHYIYSLYTSTV 290
           G  C+     K  S   + L +   T F + L +  LC   IFV ++  + +  +   T 
Sbjct: 38  GGYCILLKTPKEMSSVKWSLFNLQFTSFVLDLTLSFLCTAYIFVPVMAGYGVGIVDIDTA 97

Query: 291 YFIYFIIDF*ALLNCVYVI 347
            + Y I+    +  C  V+
Sbjct: 98  KYAYIIVTVVFITGCAIVV 116


>U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical
           protein B0244.4 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 171 LDENKTIF*ITLDILVLCLDDIFVALIVTHYIYSLYTSTVYFIYFIID 314
           + + + IF ++  I  L    I +AL +   I S +T  +YF++F+ID
Sbjct: 77  ITKKQYIFMVSRAISALTACVIMLALRILQLITSSFT--IYFLFFLID 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,353,481
Number of Sequences: 27780
Number of extensions: 107821
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)