Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1959
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   6.4  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   8.5  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   8.5  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 328 SSSLMDWSPSRIGVSDNPSYVPIVTSTFTTPMS 426
           SSS M  S S   +S + S  P+ +S+FT+P S
Sbjct: 44  SSSSMLSSSSATAISSSSSSSPLSSSSFTSPAS 76


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 388 RMMDYLIPQYDSETNPLTSLIIRL*LALSDRI-YVPGPAYSHC*NSPLK 245
           R  D LIP  D   +    ++  L   L + + YV GP Y+H   SPL+
Sbjct: 46  RTRDELIPFLDESIDDEDEVLSALADQLGNFVDYVGGPEYAHVLLSPLE 94


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 334 SLMDWSPSRIGVSDNP 381
           S+ D+S SRIG+S+NP
Sbjct: 152 SIQDFSLSRIGLSNNP 167


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 422 IGVVNVEVTIGTYDGLSDTPIRLGDQSINEL 330
           +G  NV++T   +D + DTP ++   +IN+L
Sbjct: 373 VGSKNVDLTESAFDSIPDTPTKI-ITNINKL 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,324
Number of Sequences: 5004
Number of extensions: 43463
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)