Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1959
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062...    29   2.2  
08_01_0415 + 3687998-3688096,3688326-3688520,3689219-3689385,368...    27   8.7  

>04_04_0294 +
           24204563-24204748,24205531-24205620,24205980-24206211,
           24207180-24207457,24207576-24207647,24208054-24208295,
           24208781-24209197,24209296-24209497,24209624-24209738,
           24209821-24209906,24210235-24210354,24210431-24210519,
           24210588-24210669,24211072-24211263,24211546-24211668
          Length = 841

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 238 DVILVENFNSDCMLGLAHIYDXKAPIIALLSSSLMDWSPSRIGVSDNPSYVPIVTSTF-- 411
           D+ L +N+   C+L L H             S  +D S S +     P Y  +V+S    
Sbjct: 108 DICLEKNYQEKCVLALVHSLQSYEDRSPHRKSKALDCSSSLM-----PRYQLMVSSVLLT 162

Query: 412 TTPMSFVQRXKNTVLNVYYK 471
           T P+SF +     +LNVY+K
Sbjct: 163 TLPLSFPE-----ILNVYFK 177


>08_01_0415 +
           3687998-3688096,3688326-3688520,3689219-3689385,
           3689459-3689509,3689576-3689657,3689764-3689832,
           3689939-3690109
          Length = 277

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 403 STFTTPMSFVQRX-KNTVLNVYYKLGXRYAIQLXEKEIIXNHYGRKIXDLQK 555
           S +    S++Q    NT  N+Y+  G +  ++   K      +GRK+ + QK
Sbjct: 147 SVYFVVSSYIQNSDSNTSRNMYFSWGAQVDVKRLPKRPAPPRFGRKLTESQK 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,825
Number of Sequences: 37544
Number of extensions: 259112
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)