Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1957
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    29   0.54 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    29   0.94 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    29   0.94 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    27   2.2  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.0  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   8.7  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.7  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 601 PXG-ARMPVVWRPASLNADSLRKVA 530
           P G  RM V+W+PA LN DS+  +A
Sbjct: 674 PSGRVRMSVMWKPAQLNNDSISSMA 698


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 353  PDLDILLQCPVCYEIPLGQIYQCNEXHHVCERCKSRINLCPVCRALFFGTRNF 511
            PD +I         + L   Y+C +  H    CK RI    +C  LF G   F
Sbjct: 1787 PDTEIRAHTGKACPVRLSTCYKCGKADHNLRECKLRIRFQGLC--LFCGLTKF 1837


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 353  PDLDILLQCPVCYEIPLGQIYQCNEXHHVCERCKSRINLCPVCRALFFGTRNF 511
            PD +I         + L   Y+C +  H    CK RI    +C  LF G   F
Sbjct: 1787 PDTEIRAHTGKACPVRLSTCYKCGKADHNLRECKLRIRFQGLC--LFCGLTKF 1837


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 460 HQPVPC-LPSPFFRHTELCHGRXDWQPSANCRHSNLP 567
           H P    LP P F H+ +   + +WQP     +SN+P
Sbjct: 165 HSPAASNLPIPTFLHSPVSE-KAEWQPPTGSVNSNMP 200


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +2

Query: 449 CKSRINLCPVCRALFFGTRNFAMEXLIGNLPQTVGIQTCRTP--HYWHSGPXWLLASRRX 622
           C S  + CP+          + +E   G +    G+ TC  P   ++ SG   L  S R 
Sbjct: 414 CYSLASSCPLDLGFACPKAGYGLEFSYGEVSNVTGLITCNAPGVEFYESGSALLNISWRT 473

Query: 623 TLILMI 640
             I +I
Sbjct: 474 FFISLI 479


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 605 TAXWGQNASSVASGKFECRQFAEGCQSXLPWQSSVCRK 492
           T  +G + +++A+   E    AEG    +PW +SVC K
Sbjct: 191 TIVFGDSGTTIAARVLEL--VAEGRGFAIPWYTSVCSK 226


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 88  NFLVLTTNNQNKGDVLDXCLVSSSEFHQSNENITVE 195
           N ++LT+ N   GD+L  CL    +   +NE  T E
Sbjct: 118 NTIILTSKN---GDILGCCLTPEDKSGVANEKYTSE 150


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 461 INLCPVCRALFFGTRNFAMEXLIGN 535
           ++ C  CR++F G RNF +  +  N
Sbjct: 425 LHWCINCRSIFSGDRNFIVSSIFDN 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,271
Number of Sequences: 5004
Number of extensions: 58920
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)