Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1957
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 51 9e-07
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 51 1e-06
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 50 1e-06
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 50 2e-06
01_01_0147 - 1332752-1333447,1333557-1333739 44 1e-04
06_02_0097 + 11710560-11710859,11712605-11713270 42 5e-04
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 39 0.004
05_01_0380 + 2978256-2979284 37 0.015
05_01_0379 + 2975701-2976831 36 0.026
05_01_0382 + 2985526-2986659 35 0.079
01_06_0794 + 32050413-32050523,32050663-32051391 34 0.10
05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800 33 0.18
07_03_0427 - 18080959-18081079,18081203-18081410,18081608-18081710 31 0.74
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956... 31 0.98
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 31 1.3
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 30 1.7
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 29 3.9
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933... 29 3.9
07_03_0175 - 14757109-14757311,14757537-14757615 29 5.2
11_04_0394 + 17195144-17195498,17195956-17195960 28 6.9
03_05_1059 - 30020877-30021539,30022367-30022375 28 9.1
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 51.2 bits (117), Expect = 9e-07
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 368 LLQCPVCYEIPLGQIYQCNEXHHVCERCKSRI-NLCPVCRALFFGTRNFAMEXLIGNL 538
LL+CPVC I+QC+ H +C CK R+ N CP CR R A+E + +L
Sbjct: 442 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASL 499
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 368 LLQCPVCYEIPLGQIYQCNEXHHVCERCKSRI-NLCPVCRALFFGTRNFAMEXLIGNL 538
LL+CPVC I+QC H +C CK+R+ N CP CR R A+E + +L
Sbjct: 97 LLECPVCTNSMFPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESL 154
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 368 LLQCPVCYEIPLGQIYQCNEXHHVCERCKSRI-NLCPVCRALFFGTRNFAMEXLIGNL 538
LL+CPVC I+QC H +C CK+R+ N CP CR R A+E + +L
Sbjct: 83 LLECPVCTNSMYPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESL 140
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 350 LPDLDILLQCPVCYEIPLGQIYQCNEXHHVCERCKSRI-NLCPVCRALFFGTRNFAMEXL 526
L L+ LL+CPVC I QC H +C CK R+ N CP CR R A+E +
Sbjct: 51 LTGLNDLLECPVCTNSMRPPILQCPNGHTICSNCKHRVENHCPTCRQELGNIRCLALEKV 110
Query: 527 IGNL 538
+L
Sbjct: 111 AESL 114
>01_01_0147 - 1332752-1333447,1333557-1333739
Length = 292
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 299 RQSTMEESRPPQDGEEELPDLDI-----LLQCPVCYEIPLGQIYQCNEXHHVCERCKSRI 463
+++ E++ QDG++E L L+CP+C+ ++Y C H C C +++
Sbjct: 17 KRTRWSENKAQQDGKDETTKLTYSIERDALECPICFVPFEDRVYMCKNGHAACGSCYAKM 76
Query: 464 N-LCPVC 481
N +CP C
Sbjct: 77 NTMCPCC 83
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 368 LLQCPVCYEIPLGQIYQCNEXHHVCERCKSRI-NLCPVCRALFFGTRNFAMEXLIGNL 538
+L C +C+E +YQC H C C S++ N C +C RN A+E ++ ++
Sbjct: 84 VLDCSICFESLRPPLYQCQNGHVACFSCWSKLSNKCHICSRDAKFARNIALEKIVESI 141
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 356 DLDILLQCPVCYEIPLGQIYQCNEXHHVCERCKSRINLCPVCRA-LFFGT---RNFAMEX 523
D+++L CPVC++I ++QC+ H VC C+ + C + FGT R AME
Sbjct: 33 DMEVL-HCPVCFQILRPPVFQCDLGHLVCSPCRDNLPAGGKCPSPSCFGTPSVRCVAMER 91
Query: 524 LIGNL 538
++ ++
Sbjct: 92 VVNSV 96
>05_01_0380 + 2978256-2979284
Length = 342
Score = 37.1 bits (82), Expect = 0.015
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Frame = +2
Query: 371 LQCPVCYEIPLGQ-IYQCNEXHHVCERCKSRI---NLCPVCRALFFG---TRNFAMEXLI 529
L+C VC+ +PL I+QC H VC C+ ++ C VCR G R +A+E L+
Sbjct: 73 LECGVCF-LPLRPPIFQCEVGHVVCSPCRDKLAPAGRCHVCRVAVAGGEYRRCYALERLV 131
>05_01_0379 + 2975701-2976831
Length = 376
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +2
Query: 371 LQCPVCYEIPLGQIYQCNEXHHVCERCKSRI---NLCPVCRALFFG---TRNFAMEXLI 529
L+C VC+ + I+QC H VC C+ + C VCR G R +A+E L+
Sbjct: 123 LECGVCFLLLRPPIFQCEVGHVVCAPCRDTLAPAGRCYVCRVAVAGGEYRRCYALERLV 181
>05_01_0382 + 2985526-2986659
Length = 377
Score = 34.7 bits (76), Expect = 0.079
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = +2
Query: 371 LQCPVCYEIPLGQ-IYQCNEXHHVCERCKSRI---NLCPVCRALFFG---TRNFAMEXLI 529
L+C VC +PL I+QC H VC C+ ++ C VCRA G R A+E L+
Sbjct: 124 LECGVCC-LPLRPPIFQCEVGHVVCAPCRDKLAPAGRCHVCRAAVAGGEYRRCHALERLV 182
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 356 DLDILLQCPVCYEIPLGQIYQCNEXHHVCERCKSRI---NLCPVCRALFFGTRNFAMEXL 526
DL++L C VC + QC H +C C ++ N C VC R FA+E +
Sbjct: 18 DLEVL-DCTVCCHPLKPPVLQCGVGHVICSSCHGKLPDKNRCHVCAMDTAYNRCFAVEQI 76
Query: 527 IGNL 538
+ ++
Sbjct: 77 LRSI 80
>05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800
Length = 239
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 296 SRQSTMEESRPPQDGEEE---LPDLDILLQCPVCYEIPLGQ-IYQCNEXHHVCERCKSRI 463
+ + EE PP + D D L +C VC +PL ++QC + H VC C+ ++
Sbjct: 39 AEMAASEEQAPPSSSRRAFVTVADADAL-ECGVC-RLPLRPPVFQCEDGHVVCSPCRDKL 96
>07_03_0427 - 18080959-18081079,18081203-18081410,18081608-18081710
Length = 143
Score = 31.5 bits (68), Expect = 0.74
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 617 GGRPTAXWGQ-NASSVASGKFECRQFAEGCQSXLPWQSSVCRKKGLG 480
GGRP + N ++A K E + C + LP++++ CRKK G
Sbjct: 76 GGRPGYPMIEPNLLALARSKMEKKMICRKCYARLPYKATNCRKKKCG 122
>12_01_0961 +
9566730-9566998,9567096-9567187,9567294-9567427,
9567542-9567591,9569026-9569100,9569179-9569734
Length = 391
Score = 31.1 bits (67), Expect = 0.98
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Frame = +2
Query: 347 ELPDLDIL---LQCPVCYEI-------PLGQIYQCNEXHHVCERCKSRINLCPVCRALFF 496
ELP +D L L C +C EI P G + H +C R CP CR L
Sbjct: 151 ELPCMDRLREELSCAICLEICFEPSTTPCGHSFCMKCLKHAAAKCGKR---CPKCRQLIS 207
Query: 497 GTRNFAMEXLIGNLPQ 544
+R+ + ++ N Q
Sbjct: 208 NSRSCTVNTVLWNTIQ 223
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 377 CPVCYEIPLGQIYQCNEXHHVCERCKSRINLCPVCR 484
C +C+E + + + +CE C + CP+CR
Sbjct: 351 CRICFERDICIVLLPCRHYVLCEACSDKCRSCPICR 386
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 368 LLQCPVCYEIPLGQIYQCNEXHHV-CERCKSRINL-CPVCRA-LFFGTRNFAMEXLIGNL 538
+L+C VC+ +YQC H+ C C + + C CRA TR AME + L
Sbjct: 50 VLECDVCFGPLTPPLYQCMRRGHITCSTCVAEMGQECQWCRAPEATTTRCRAMEHFLAAL 109
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 368 LLQCPVCYEIPLGQIYQCNEXHHVCERCK 454
LL C C + +++C+E H VC C+
Sbjct: 390 LLHCHACLQPLKPPVFKCDEAHIVCSGCR 418
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 617 GGRPTAXWGQNASSVASGKFECRQFAEGCQSXLPWQS 507
GG P A G A+ SG R ++GCQS WQS
Sbjct: 101 GGEPCAACGYIATKKCSGCKRVRYCSQGCQSK-HWQS 136
>05_06_0051 -
25190803-25191216,25191301-25191891,25193248-25193317,
25193392-25193443,25195368-25195440,25195557-25195646
Length = 429
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -2
Query: 590 QNASSVASGKFECRQFAEGCQSXLPWQSSVCRKKGLGKQGTG 465
++ +G+ +C+ + EGC + S KK +G G G
Sbjct: 323 EHGEMAMNGELDCKDYHEGCNAAFAANPSAMNKKKVGFCGNG 364
>07_03_0175 - 14757109-14757311,14757537-14757615
Length = 93
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 207 SRSIMLYNYICTLCM*AKVDRAELIHSSAPVDNQRWRRVG--RLRTVKRNCQIWTYCCNA 380
SRS++L ++ L M A++ ++++++ N+ +VG L VK YCC
Sbjct: 7 SRSLLLVLFVVLLAMPARIYGKHMVYTASQSKNEGRYKVGINGLEPVKCTISPDGYCCYD 66
Query: 381 RYAMKYR 401
+ + Y+
Sbjct: 67 KKSKDYK 73
>11_04_0394 + 17195144-17195498,17195956-17195960
Length = 119
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 394 NTVRSD-LPVQRXAPRMRK-MQVPHQPVPCLPSPFF-RHTELCH 516
N +SD QR +P+ R+ +QVPH+ P P+F RH L H
Sbjct: 24 NNFKSDPTHPQRSSPQYRRSLQVPHRVDSSSPLPYFPRHGYLRH 67
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 437 VCERCKSRINLCPVCRALFFGTRN 508
+C C R ++CP+CR+ T N
Sbjct: 51 LCAECSQRCDVCPICRSPIPDTGN 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,380,594
Number of Sequences: 37544
Number of extensions: 433550
Number of successful extensions: 1253
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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