Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1957
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absent...    52   3e-07
AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical ...    52   3e-07
Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    30   1.5  
Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z78200-2|CAB01578.1|  588|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.      30   2.0  
AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical ...    29   2.7  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z73973-5|CAA98267.2|  882|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absentia 
           protein homologue-1 protein.
          Length = 339

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +2

Query: 368 LLQCPVCYEIPLGQIYQCNEXHHVCERCKSRINLCPVCRALFFGTRNFAMEXLIGNLPQT 547
           + +CPVC E  L    QC+  H VC  C+ ++  CP CR      RN  +E +   +   
Sbjct: 87  VFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCRGPTPSVRNLGLEKIANTVRFP 146

Query: 548 VGIQTCRTPHYWH 586
               T   P  +H
Sbjct: 147 CKFSTSGCPLNFH 159


>AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.2 protein.
          Length = 419

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +2

Query: 368 LLQCPVCYEIPLGQIYQCNEXHHVCERCKSRINLCPVCRALFFGTRNFAMEXLIGNLPQT 547
           + +CPVC E  L    QC+  H VC  C+ ++  CP CR      RN  +E +   +   
Sbjct: 153 VFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCRGPTPSVRNLGLEKIANTVRFP 212

Query: 548 VGIQTCRTPHYWH 586
               T   P  +H
Sbjct: 213 CKFSTSGCPLNFH 225


>Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical
           protein C30F2.2 protein.
          Length = 203

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = +2

Query: 350 LPDLDILLQCPVCYEIPLGQIYQ-CNEX--HHVCERCKSRINLCPVCRA--LFFGT 502
           LP++D   +CP C E      ++ C     H +C +C+S+I  CP+C+    FFGT
Sbjct: 2   LPNVDFS-RCPTCLEDYDDNSHRPCVGFCGHSICLKCQSKIVSCPLCKRKNAFFGT 56


>Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical
           protein T23F6.3 protein.
          Length = 291

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = +2

Query: 374 QCPVCYEIPLGQIYQCNEXHHV--CERCKSRINL------CPVCRALFFGTRNFAMEXLI 529
           +C VC+E P+     CN   +V  C+ C  R +       CP+CR  +  T + +   +I
Sbjct: 209 ECTVCFETPVDP-QGCNRCMNVIGCKTCVQRWHRSSTQPSCPLCRRRWIATPDVSPMEII 267

Query: 530 GNLPQTVGIQTCRTPHYWHS 589
            +  Q+  ++  R     HS
Sbjct: 268 KSRRQSFRLRQIRATRRSHS 287


>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
           protein Y54G2A.40 protein.
          Length = 636

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 419 CNEXHHVCERCKSRINLCPVCRALFFGTRNFA 514
           C+  H +C +C ++   CP+C      T N+A
Sbjct: 31  CSCQHSLCTQCFNKYKNCPICAKPLVRTENYA 62


>Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical
           protein F45G2.6 protein.
          Length = 462

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 377 CPVCYEIPLGQIYQCNEXHHVCERCKSRINLCPVCRA 487
           CP+C E  L    + N  HH C +C    N  P C A
Sbjct: 18  CPIC-EQALRDPIKLNCDHHYCRQCFENENRTPGCAA 53


>Z78200-2|CAB01578.1|  588|Caenorhabditis elegans Hypothetical
           protein T04H1.2 protein.
          Length = 588

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 374 QCPVCYEIPLGQIYQCNEXHHVCERCKSRINLCPVC 481
           Q PVCYE     +  C+   ++CE  ++ + +  VC
Sbjct: 493 QPPVCYEFTANLLLLCHSTKYICEGFQATVFIGSVC 528


>AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.
          Length = 462

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 377 CPVCYEIPLGQIYQCNEXHHVCERCKSRINLCPVCRA 487
           CP+C E  L    + N  HH C +C    N  P C A
Sbjct: 18  CPIC-EQALRDPIKLNCDHHYCRQCFENENRTPGCAA 53


>AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical
           protein T10D4.6 protein.
          Length = 796

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
 Frame = -3

Query: 658 CRY--QSRYHQNQCXSAGGQQPXGAR---MPVVWRPASLNADSLRKVANQXFHGKVPCAE 494
           CR+    +Y  NQC  A  +   G +    P+ W    L ++ LRK+  Q    K  C E
Sbjct: 241 CRWFLDHKYSTNQCTYALAELEQGWKDCDPPINWEKVFLESEDLRKMFTQLLAQKRLCTE 300

Query: 493 ---KKGSANRAQVDAGLASFAYV 434
              +  + NR+++ A L +F ++
Sbjct: 301 LELRLITKNRSRI-ADLVTFYHI 322


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = +2

Query: 410 IYQCNEXHHVCERCKSRINLCPVCRALFFGTRNFAMEXLI 529
           +  CN  H +C +C  +   CP+C+     + N+    ++
Sbjct: 51  VSSCN--HSLCSQCFDKFTECPICKEPLVRSENYQARKIV 88


>Z73973-5|CAA98267.2|  882|Caenorhabditis elegans Hypothetical
           protein F25D1.4 protein.
          Length = 882

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 184 YSRCFDEIHLN*PNXSLGRHLCSGYWLLKQENCII 80
           +S+C DE+H   PN    R +  G WL +  N ++
Sbjct: 766 FSKCLDELHEKAPNLKKTRFI-RGEWLSRLRNQVL 799


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
           protein T13H2.5a protein.
          Length = 2471

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
 Frame = +2

Query: 377 CPVCYEIPLGQIYQCNEXHHVCERC-----KSRINLCPVCR 484
           C VC E+  G I      H  C++C         N CP CR
Sbjct: 162 CDVCQELIQGSIMTKKCGHRFCDQCILVAFMRSGNTCPTCR 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,793
Number of Sequences: 27780
Number of extensions: 364817
Number of successful extensions: 915
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)