Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1956
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    28   1.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.3  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   2.3  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    27   3.1  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    27   4.1  
SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   5.4  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   5.4  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   9.5  

>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 29  PPQIDSHYSRAADAHSRDHDQDQKEEPTQGPYEDDEGMVGD---DPAAYLTNEAHDAPVG 199
           PPQ +    + A     +  +++ EEP +G  E++E    +   DP   +T E  DAP  
Sbjct: 105 PPQPEEKEGKEAK-EPEEPPKEEAEEPQEGGEEEEEEEEEEEITDPLEKMTQECMDAPDC 163

Query: 200 DEI 208
            E+
Sbjct: 164 KEV 166


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 476  NSTTNTIXKSHLYITIIDVPSAKANLRQASYEGESH 369
            NST+  I K       I+V +   NL+  SYEG+S+
Sbjct: 1752 NSTSEDINKDECVSKDIEVDNFALNLQSQSYEGDSN 1787


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 122 YEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAE 223
           +EDD G        YL N + D+P  DE+A  +E
Sbjct: 13  WEDDLGEDISGQNEYLDNTSQDSPQNDELAEKSE 46


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 68  AHSRDHDQDQKEEPTQGPYEDD-EGMVGDDPAAYLTNEAHDAPVGD 202
           + + D+   Q++E   G  E+D E  V DD     T EA +AP  D
Sbjct: 19  SENEDNHTSQQDELINGHIENDSETAVSDDGLFSNTEEATEAPEAD 64


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 20  FKSPPQIDSHYSRAADAHSRDHDQDQKEEPTQGPYEDDEGMVG 148
           FKSP  +D H     +    D++ +Q  +     YE DE + G
Sbjct: 5   FKSPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKG 47


>SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 83  HDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAEPDATE--HS--VH 250
           H ++ +EE    P E+       D  AY+ ++  + P+ +    TAE  A+E  HS  V 
Sbjct: 45  HSRNPQEEDVIPPKENASREDATDSEAYVRSDWDNTPIPELEKETAEKAASERQHSEKVT 104

Query: 251 ASGMLAPPA 277
            +   +PP+
Sbjct: 105 INDKTSPPS 113


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 86  DQDQKEEPTQGPYEDDEGMVGDD 154
           D+D++E+P  G  EDD+ +V  D
Sbjct: 201 DKDEEEKPWSGDEEDDDELVVKD 223


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 570 TRVASIFNCITILPHIT 520
           TRV + FNCI +LP  T
Sbjct: 341 TRVENAFNCIDMLPRAT 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,349
Number of Sequences: 5004
Number of extensions: 45718
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)