Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1956
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    28   6.8  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    28   6.8  
Z82070-4|CAB04913.2|  227|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z78536-4|CAB01718.3|  194|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z49887-6|CAA90059.3|  194|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AL034488-12|CAD31697.1|  450|Caenorhabditis elegans Hypothetical...    28   8.9  

>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 74  SRDHDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHD 187
           S + D++ +EE  +  Y   +   G+D   Y+T+E  D
Sbjct: 622 STEDDEEYEEEDEEEEYSSGDWTEGEDDEEYITDEEED 659


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 50  YSRAADAHSRDHDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAEPD 229
           Y R A  +S+D    Q + P + P++++   + D  +      + D P+ D   +T +  
Sbjct: 664 YRRIAANYSKDQLALQDQLPDKEPWDEENVDLTDSESESRNAASGDVPIDD--VATIDTS 721

Query: 230 ATEHSVH 250
           +T H V+
Sbjct: 722 STYHQVY 728


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 50  YSRAADAHSRDHDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAEPD 229
           Y R A  +S+D    Q + P + P++++   + D  +      + D P+ D   +T +  
Sbjct: 664 YRRIAANYSKDQLALQDQLPDKEPWDEENVDLTDSESESRNAASGDVPIDD--VATIDTS 721

Query: 230 ATEHSVH 250
           +T H V+
Sbjct: 722 STYHQVY 728


>Z82070-4|CAB04913.2|  227|Caenorhabditis elegans Hypothetical
           protein W04E12.4 protein.
          Length = 227

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 68  AHSRDHDQDQKEEPTQGPYEDDEGMVGDDPAAYL-TNEAHDAPVGDEIAST 217
           A   D+D++ K  PT  P E D+G   D  +  L T+E  D     +I S+
Sbjct: 143 ADDSDNDENVKNSPTSEP-ESDDGTDSDLESEILETDEMDDVTTSPQITSS 192


>Z78536-4|CAB01718.3|  194|Caenorhabditis elegans Hypothetical
           protein F09B9.4 protein.
          Length = 194

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 77  RDHDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAEPD 229
           R  D D  +EP  G    + G   D+       E      GD+ +S++E D
Sbjct: 35  RQEDDDNNDEPAGGSEMGESGKAKDEKERTSVLEKQAGKKGDDESSSSEED 85


>Z49887-6|CAA90059.3|  194|Caenorhabditis elegans Hypothetical
           protein F09B9.4 protein.
          Length = 194

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 77  RDHDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAEPD 229
           R  D D  +EP  G    + G   D+       E      GD+ +S++E D
Sbjct: 35  RQEDDDNNDEPAGGSEMGESGKAKDEKERTSVLEKQAGKKGDDESSSSEED 85


>AL034488-12|CAD31697.1|  450|Caenorhabditis elegans Hypothetical
           protein Y54G11A.14 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 125 EDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAEPDATEHSV 247
           +DDEG++GDD       E  +    +++A   + +A + +V
Sbjct: 210 DDDEGVMGDDDEEEEEEEEEEEEEEEDVADVVDAEAIDDAV 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,343
Number of Sequences: 27780
Number of extensions: 262571
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)