Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1954
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881... 167 9e-42
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 60 2e-09
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 48 9e-06
08_01_0011 - 81673-81724,81826-82161,82426-82556,82629-82729,828... 39 0.005
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209... 33 0.35
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908... 33 0.35
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949... 31 1.4
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 30 2.5
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 29 3.3
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 29 5.7
02_03_0293 - 17372071-17372217,17372301-17372471,17373334-173734... 25 6.4
05_03_0453 - 14223012-14223175,14223956-14223992,14224171-142243... 28 7.5
>01_06_0906 +
32886693-32886919,32887589-32887708,32887978-32888101,
32888224-32888361,32888492-32888701,32889085-32889232,
32890452-32890801,32890909-32890963,32891087-32891382,
32891480-32891531,32891740-32891947,32892064-32892446,
32894102-32894538,32895452-32895643
Length = 979
Score = 167 bits (406), Expect = 9e-42
Identities = 94/240 (39%), Positives = 128/240 (53%), Gaps = 22/240 (9%)
Frame = +3
Query: 33 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEET-------- 188
MGI GL+P ++ V G TVA+D+Y WLHKGA +C D+L +G T
Sbjct: 1 MGIQGLLPQLKSIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGLPTTRFGSGDL 60
Query: 189 --------------DMHIKYCLKYMTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNI 326
D HI+YC+ + ML +KPILVFDG HLP K E+KR SR
Sbjct: 61 PPFLGTQGFLIHFADWHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKE 120
Query: 327 SKKRAAELLSLGKIEEARSYLRRSVDITHAMALDLIXECRKMNVDCIVAPYEADAQLAYL 506
+ +RA E S G A +++VDIT +A +LI ++ VD IVAPYEADAQ+ +L
Sbjct: 121 NLERAKEHESAGNSRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFL 180
Query: 507 NIKNIAQLVITEDSDLILFGCTXVLFKMDLHGTXTLVEHPKLPHVMKCPIQHYTFDKFRE 686
++ + VITEDSDLI FGC+ ++FKMD G +L + + +T E
Sbjct: 181 SVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQGVEFHITRLQRCRELDLNGFTMQMLLE 240
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 60.5 bits (140), Expect = 2e-09
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 9/192 (4%)
Frame = +3
Query: 33 MGITGLIPFIEK----ASRRTDVSEFSGCTVAIDSYCWLHKGAFACADK---LVRGE--E 185
MGI GL + + A+ R V ++ G VAID+ +++ K ++ E E
Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
Query: 186 TDMHIKYCLKYMTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGK 365
H++ L +L IKP+ VFDG K +KR R+ S + + +G
Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120
Query: 366 IEEARSYLRRSVDITHAMALDLIXECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITED 545
+ + +R+V +T D M V + AP EA+AQ A L + + +ED
Sbjct: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASED 180
Query: 546 SDLILFGCTXVL 581
D + FG L
Sbjct: 181 MDSLTFGARRFL 192
>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 48.0 bits (109), Expect = 9e-06
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Frame = +3
Query: 345 ELLSLGKIEEARSYLRRSVDITHAMAL--DLIXECRKM----NVDCIVAPYEADAQLAYL 506
EL L + +E RR ++ +HA ++ ++ EC+++ + I+AP EA+AQ AY+
Sbjct: 827 ELSLLRQEQEYLGNERRKLE-SHAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYM 885
Query: 507 NIKNIAQLVITEDSDLILFGCTXV 578
+ N+ V+T+DSD+ LFG V
Sbjct: 886 EMTNLVDGVVTDDSDVFLFGARNV 909
Score = 46.4 bits (105), Expect = 3e-05
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Frame = +3
Query: 33 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEET-DMHIKYC 209
MG+ GL + RR V +G +A+D+ W+ + A D +G+ D H+
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDD--KGDMIRDAHLLGF 58
Query: 210 LKYMTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISK---KRAAELLSLGKIE 371
L+ + LL +P+ VFDG K T + RR R+ ++ ++ AE L L ++
Sbjct: 59 LRRICKLLFLRARPVFVFDGATPALKRRTLAARRRHRDAAQAKVRKTAEKLLLSHLK 115
>08_01_0011 -
81673-81724,81826-82161,82426-82556,82629-82729,
82849-82931,83154-83253,83366-83513,83664-83723,
84272-84345,84482-84554,84648-84699,84764-84897,
85096-85288,85386-85453
Length = 534
Score = 38.7 bits (86), Expect = 0.005
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 7/189 (3%)
Frame = +3
Query: 33 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEETDMHIKYCL 212
MG+ L +E ++ + V +D CWL + A++ + +++K
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQ--MYSANRSPAFAKDKVYLKNLF 58
Query: 213 KYMTMLLSKNI-------KPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKIE 371
+ LL+ N PIL+F L AK + S ++ + + +E + I+
Sbjct: 59 HRIRALLALNCTLLFVTGNPILLFYFSFLAAKESDQPNSHPSISLRRNKGSEFSCM--IK 116
Query: 372 EARSYLRRSVDITHAMALDLIXECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDSD 551
EA+ MAL + C+ EA+AQ A L+++++ T DSD
Sbjct: 117 EAKRL---------GMAL---------GIPCLDGLEEAEAQCASLDLESLCDGCFTSDSD 158
Query: 552 LILFGCTXV 578
LFG V
Sbjct: 159 AFLFGARTV 167
>10_08_1059 +
22618999-22619206,22620386-22620416,22620440-22620974,
22621065-22621319
Length = 342
Score = 32.7 bits (71), Expect = 0.35
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 717 R*SXPRHYAHPP*TCQKCSVVSDISLREATSDVQP 613
R + P HY+HPP +C C S + L A S +P
Sbjct: 20 RPTGPTHYSHPPGSCSGCRPASPLHLPSAESAHRP 54
>09_05_0016 +
20089545-20089748,20090072-20090263,20090644-20090814,
20090915-20091096,20091189-20091435,20091776-20091908,
20092070-20092599,20092940-20093170
Length = 629
Score = 32.7 bits (71), Expect = 0.35
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 1/184 (0%)
Frame = +3
Query: 33 MGITGLI-PFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEETDMHIKYC 209
MG+ G ++ +R G VA+D W+ + A + + +
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLF- 59
Query: 210 LKYMTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKIEEARSYL 389
+ +++ P+ V DG+ P K+ + R R AA + +
Sbjct: 60 FRTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARF-FRGSGMDLAALPSTEAEASADALVQ 118
Query: 390 RRSVDITHAMALDLIXECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDSDLILFGC 569
R+ T + D + + + + A E +A A LN + IT DSD LFG
Sbjct: 119 PRNAKFTRYVE-DCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGA 177
Query: 570 TXVL 581
V+
Sbjct: 178 KTVI 181
>02_02_0367 +
9496893-9497022,9498262-9498442,9498519-9498660,
9498757-9498826,9498920-9499089
Length = 230
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 545 IFSYH*LCYVLYVEVG*LSVCFVWSDNTIYI 453
+ YH L + +V +G L++ F+WS TI+I
Sbjct: 72 VVDYHFLTLISHVLIGVLAILFLWSKATIFI 102
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 327 SKKRAAELLSLGKIEEARSYLRRSVDITHAMALDLIXECRKMNVDCIVA 473
S+ AA + ++EE +S+ +++ +A DLI +NV C++A
Sbjct: 611 SEHAAAAAAAGEEVEELKSFDAAFIEVDNATLFDLILAANYLNVPCLLA 659
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +3
Query: 279 PAKAMTESKRRESRNISKKRAAELLSLGKIEEARSYLRRSV 401
P+ +TE R S+ +K +A E +S GK+EEA +L +++
Sbjct: 346 PSIDVTEENRDASQE-AKSKAMEAMSEGKLEEAIDHLTKAI 385
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 545 IFSYH*LCYVLYVEVG*LSVCFVWSDNTIYI 453
+ YH L + +V +G L++ F+WS T +I
Sbjct: 108 VLDYHLLTLLSHVMIGALAILFLWSKATTFI 138
>02_03_0293 -
17372071-17372217,17372301-17372471,17373334-17373435,
17373803-17374216,17374369-17374512,17374634-17375647
Length = 663
Score = 24.6 bits (51), Expect(2) = 6.4
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 324 ISKKRAAELLSLG-KIEEARSYLRRSVDITHAMALDL 431
+SK++A EL SLG K E + YL S ++ A+DL
Sbjct: 528 VSKRKATELKSLGNKAVEKKDYL--SATGFYSQAVDL 562
Score = 22.2 bits (45), Expect(2) = 6.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 411 HAMALDLIXECRKMNVDCIVAPYEADAQLAYL 506
H LD ECRK+ D + A Y A L L
Sbjct: 584 HKALLDAY-ECRKLRPDWLKAYYRQGAALMLL 614
>05_03_0453 -
14223012-14223175,14223956-14223992,14224171-14224312,
14224858-14225038,14225460-14225655
Length = 239
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = -1
Query: 536 YH*LCYVLYVEVG*LSVCFVWSDNTIYIH-----FP-ALXNKIQCHGVSDI 402
YH L + + + L+VCFVW++ +I+ FP A+ +++QC ++ I
Sbjct: 97 YHLLTFFCHSLMVFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHI 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,235,214
Number of Sequences: 37544
Number of extensions: 361355
Number of successful extensions: 866
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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