Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1954
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-2|CAB07612.2| 639|Caenorhabditis elegans Hypothetical pr... 167 8e-42
AY303575-1|AAP57297.1| 382|Caenorhabditis elegans cell death-re... 74 1e-13
AC024791-9|AAF60653.1| 382|Caenorhabditis elegans Cell-death-re... 74 1e-13
AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical ... 45 6e-05
U13019-9|AAC24447.1| 434|Caenorhabditis elegans Hypothetical pr... 40 0.003
U22831-8|AAK20070.2| 545|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 29 5.1
U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine rece... 29 5.1
U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical p... 28 6.8
U00031-10|AAK18872.2| 460|Caenorhabditis elegans Hypothetical p... 28 6.8
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 28 6.8
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 28 6.8
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 28 6.8
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 28 8.9
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 28 8.9
>Z93382-2|CAB07612.2| 639|Caenorhabditis elegans Hypothetical
protein F45G2.3 protein.
Length = 639
Score = 167 bits (406), Expect = 8e-42
Identities = 88/186 (47%), Positives = 115/186 (61%), Gaps = 1/186 (0%)
Frame = +3
Query: 33 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEETDMHIKYCL 212
MGI+GL+PF++ A R+ ++ E G +VAID C LH+G C DK+ GEET ++ Y
Sbjct: 1 MGISGLLPFVKNACRKGNILELRGKSVAIDVSCLLHRGLTGCMDKIHMGEETQSYVNYVN 60
Query: 213 KYMTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKIEEARSYLR 392
KY+ LL ++VFDGR LPAK T +RRE R K+ A LL+ G EAR R
Sbjct: 61 KYVKELLGMGCHVVMVFDGRPLPAKKGTNEERRELREKRKEHAEMLLAKGLEREARDTYR 120
Query: 393 RSVDITHAMALDLIXECRKM-NVDCIVAPYEADAQLAYLNIKNIAQLVITEDSDLILFGC 569
+ I+ + + I R M NVD +VAPYEADAQLAYL + + VITEDSDLI+FGC
Sbjct: 121 LATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVITEDSDLIVFGC 180
Query: 570 TXVLFK 587
+ FK
Sbjct: 181 EMIYFK 186
>AY303575-1|AAP57297.1| 382|Caenorhabditis elegans cell
death-related nuclease 1 protein.
Length = 382
Score = 74.1 bits (174), Expect = 1e-13
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 8/191 (4%)
Frame = +3
Query: 33 MGITGLIPFIE----KASRRTDVSEFSGCTVAIDSYCWLHKGAFACAD--KLVRGE--ET 188
MGI GL I A + ++ F G TVAID+ L++ A ++ E ET
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGET 60
Query: 189 DMHIKYCLKYMTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKI 368
H+ L + +KP+ VFDG+ K KR E R ++K E G +
Sbjct: 61 TSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDV 120
Query: 369 EEARSYLRRSVDITHAMALDLIXECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDS 548
+EA + RR V +T + M + + AP EA+AQ A+L +TED
Sbjct: 121 KEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDM 180
Query: 549 DLILFGCTXVL 581
D + FG T +L
Sbjct: 181 DALTFGSTVLL 191
>AC024791-9|AAF60653.1| 382|Caenorhabditis elegans
Cell-death-related nuclease protein1 protein.
Length = 382
Score = 74.1 bits (174), Expect = 1e-13
Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 8/191 (4%)
Frame = +3
Query: 33 MGITGLIPFIE----KASRRTDVSEFSGCTVAIDSYCWLHKGAFACAD--KLVRGE--ET 188
MGI GL I A + ++ F G TVAID+ L++ A ++ E ET
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQLQSEDGET 60
Query: 189 DMHIKYCLKYMTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKI 368
H+ L + +KP+ VFDG+ K KR E R ++K E G +
Sbjct: 61 TSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDV 120
Query: 369 EEARSYLRRSVDITHAMALDLIXECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDS 548
+EA + RR V +T + M + + AP EA+AQ A+L +TED
Sbjct: 121 KEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDM 180
Query: 549 DLILFGCTXVL 581
D + FG T +L
Sbjct: 181 DALTFGSTVLL 191
>AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical
protein F57B10.6 protein.
Length = 829
Score = 45.2 bits (102), Expect = 6e-05
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = +3
Query: 33 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEETDMHIKYCL 212
MGITGL +E + + G +AID W+++ A ++ H++ +
Sbjct: 1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIYQAQLA-----YPSDQPFPHLRLLV 55
Query: 213 KYMTMLLSKNIKPILVFDGRHLP--AKAMTESKRRESRN 323
++ LL I+P+ VFDG +P + + E++R++ +N
Sbjct: 56 NRLSKLLFYKIRPVFVFDGPQVPPLKRQVLEARRQKRQN 94
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 402 DITHAMALDLIXECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDSDLILFGCTXV 578
D T + DL + I +P EA+AQ L + V+++DSD+ FG V
Sbjct: 472 DKTPELYRDLQEFLTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHV 530
>U13019-9|AAC24447.1| 434|Caenorhabditis elegans Hypothetical
protein T12A2.8 protein.
Length = 434
Score = 39.5 bits (88), Expect = 0.003
Identities = 42/178 (23%), Positives = 75/178 (42%)
Frame = +3
Query: 33 MGITGLIPFIEKASRRTDVSEFSGCTVAIDSYCWLHKGAFACADKLVRGEETDMHIKYCL 212
M I G+ + R+ T++ID + WL++ C + + + ++
Sbjct: 1 MTINGIWEWANHVVRKVPNETMRDKTLSIDGHIWLYESLKGC--EAHHQQTPNSYLVTFF 58
Query: 213 KYMTMLLSKNIKPILVFDGRHLPAKAMTESKRRESRNISKKRAAELLSLGKIEEARSYLR 392
+ LL I PI+VFD ++ A + + ++ + +KR S G + + L
Sbjct: 59 TRIQRLLELKIIPIVVFD--NINASSSAHESKDQNEFVPRKRR----SFG--DSPFTNLV 110
Query: 393 RSVDITHAMALDLIXECRKMNVDCIVAPYEADAQLAYLNIKNIAQLVITEDSDLILFG 566
V T+A+ +L + I+AP + +AQ A L + IT D D LFG
Sbjct: 111 DHVYKTNALLTEL-------GIKVIIAPGDGEAQCARLEDLGVTSGCITTDFDYFLFG 161
>U22831-8|AAK20070.2| 545|Caenorhabditis elegans Hypothetical
protein F47D12.9a protein.
Length = 545
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 531 VITEDSDLILFGCTXVLFKMDLHGTXTLVEHPKLPHVMKCPIQHY 665
+ T DL L CT + +H + L +PK +K PI+HY
Sbjct: 120 ITTLMDDLTLGRCTMARVERHIHESRLLNCNPKPSFTIKTPIEHY 164
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 158 TCKSSFMKPAIRINSNCTTAEFTNISPAGSLFNKWYQT 45
T K ++M P IR SN T + +I+ GS FN Y+T
Sbjct: 1149 TPKVNYM-PVIRSFSNRVTIVYKSINSEGSFFNLTYET 1185
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 158 TCKSSFMKPAIRINSNCTTAEFTNISPAGSLFNKWYQT 45
T K ++M P IR SN T + +I+ GS FN Y+T
Sbjct: 1149 TPKVNYM-PVIRSFSNRVTIVYKSINSEGSFFNLTYET 1185
>U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine
receptor, class x protein77 protein.
Length = 313
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -2
Query: 397 LRRRYERASSIFPKLKSSAALFFE-IFRDSRLFDSV 293
L+R+ + ++ F +K + ALFF+ IF+DS F SV
Sbjct: 206 LKRKTNQNAANFKDIKKNMALFFQIIFQDSLFFISV 241
>U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical
protein K06C4.8 protein.
Length = 355
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = -1
Query: 668 SVVLYRTFHYVRQLRMFNQSSCTMEIHFEEDXSTSKQYEIRIFSYH*LCYVLYVEVG*LS 489
S++ ++QLR N+ M ++D T+ + IF Y +C+ L V ++
Sbjct: 209 SIIAVTNIQVIQQLRKSNEERKLMTTQQQKDNKTTTMLLVMIFMYA-ICHFLCTSVKFIN 267
Query: 488 VCFVWSDNTIYIHFPALXNKIQCHGVSDI 402
++S N Y+ F + KI H +S++
Sbjct: 268 ---LFSHN--YVQFQFVIFKI-IHHISNV 290
>U00031-10|AAK18872.2| 460|Caenorhabditis elegans Hypothetical
protein B0361.2a protein.
Length = 460
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 329 KEKSSRAFKFRKDRRSPFIPAS*CRYHS-RHGTGS 430
K KS R+DR +PAS R S RHG GS
Sbjct: 116 KSKSKEVTMMRRDREGNILPASSRRSDSDRHGEGS 150
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 270 RHLPAKAMTESKRRESRNISK-KRAAELLSLGKIEEARSYLRRSVD 404
R+L K T ++RRESRNI K K++ E L K EE S +++ D
Sbjct: 1266 RNLMNKRST-AQRRESRNIEKMKKSQENLDKEKSEEKISESKKNQD 1310
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 270 RHLPAKAMTESKRRESRNISK-KRAAELLSLGKIEEARSYLRRSVD 404
R+L K T ++RRESRNI K K++ E L K EE S +++ D
Sbjct: 1266 RNLMNKRST-AQRRESRNIEKMKKSQENLDKEKSEEKISESKKNQD 1310
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 270 RHLPAKAMTESKRRESRNISK-KRAAELLSLGKIEEARSYLRRSVD 404
R+L K T ++RRESRNI K K++ E L K EE S +++ D
Sbjct: 1266 RNLMNKRST-AQRRESRNIEKMKKSQENLDKEKSEEKISESKKNQD 1310
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 588 MDLHGTXTLVEHPKLPHVMKCPIQHYTFDK 677
MD+ GT + + HV++CPI + +DK
Sbjct: 1 MDIPGTSGTSNYQQWAHVVECPICYNIYDK 30
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 588 MDLHGTXTLVEHPKLPHVMKCPIQHYTFDK 677
MD+ GT + + HV++CPI + +DK
Sbjct: 1 MDIPGTSGTSNYQQWAHVVECPICYNIYDK 30
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,868,118
Number of Sequences: 27780
Number of extensions: 330954
Number of successful extensions: 824
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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