Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1946
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 224 7e-60
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 223 2e-59
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 222 2e-59
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 1.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 4.8
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 6.4
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 6.4
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 8.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 8.4
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 8.4
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 25 8.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 224 bits (547), Expect = 7e-60
Identities = 110/165 (66%), Positives = 123/165 (74%), Gaps = 2/165 (1%)
Frame = +2
Query: 11 MARGPXEAFEALKRSQIMXCWT--NLAVCMHRXPSTGPHKLRECLPLVIFLRNRLKYALT 184
M RGP + LKR W L+ PS GPHK RECLPL++FLRNRLKYAL
Sbjct: 1 MVRGPKKH---LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALN 57
Query: 185 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 364
G EV I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT E
Sbjct: 58 GREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAE 117
Query: 365 EAKYKLCKVKRVATGPXNVPYLVTHDGRTIRYPXPLIKXNDSIXL 499
EAKYKLCKVKRV G VP+LVTHDGRTIRYP PLIK ND+I L
Sbjct: 118 EAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKL 162
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 223 bits (544), Expect = 2e-59
Identities = 109/165 (66%), Positives = 123/165 (74%), Gaps = 2/165 (1%)
Frame = +2
Query: 11 MARGPXEAFEALKRSQIMXCWT--NLAVCMHRXPSTGPHKLRECLPLVIFLRNRLKYALT 184
M RGP + LKR W L+ PS GPHK RECLPL++FLRNRLKYAL
Sbjct: 1 MVRGPKKH---LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALN 57
Query: 185 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 364
G EV I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT E
Sbjct: 58 GREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAE 117
Query: 365 EAKYKLCKVKRVATGPXNVPYLVTHDGRTIRYPXPLIKXNDSIXL 499
EAKYKLCKVKRV G VP+LVTHDGRTIRYP PLIK ND+I L
Sbjct: 118 EAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKL 162
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 222 bits (543), Expect = 2e-59
Identities = 109/165 (66%), Positives = 123/165 (74%), Gaps = 2/165 (1%)
Frame = +2
Query: 11 MARGPXEAFEALKRSQIMXCWT--NLAVCMHRXPSTGPHKLRECLPLVIFLRNRLKYALT 184
M RGP + LKR W L+ PS GPHK RECLPL++FLRNRLKYAL
Sbjct: 1 MVRGPKKH---LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALN 57
Query: 185 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 364
G EV I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT E
Sbjct: 58 GREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAE 117
Query: 365 EAKYKLCKVKRVATGPXNVPYLVTHDGRTIRYPXPLIKXNDSIXL 499
EAKYKLCKVKRV G VP+LVTHDGRTIRYP PLIK ND+I L
Sbjct: 118 EAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKL 162
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 268 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 113
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 370 SLLRGDTVDCESALNIID*TKQ 305
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 143 LVIFLRNRLKYALTGNEVLKIV 208
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 159 LRKITRGKHSRNLWGPVDGXRCIHTA 82
L+ I N+WG DG CIH A
Sbjct: 306 LKAINAYDFDDNIWGYDDGDLCIHFA 331
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 261 G*VGSVLTFPSTFMRRCFTIFR 196
G +G LTFP+ +RR F + R
Sbjct: 237 GIIGQTLTFPADVLRRRFQVNR 258
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 30 KHLKRLNAPKSWXVGQTWRCVCTXXRQPVPTS 125
+H KR +PKS + W +C Q V TS
Sbjct: 404 RHEKRHVSPKSPLIDVCWWRICVDEAQMVETS 435
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -2
Query: 256 SRVSPNFPINLYEALFHNFQDFVSGQSIL 170
S++ P I+LY L+H+ +++ Q ++
Sbjct: 410 SKIDPRVVISLYPDLYHSELSYIAFQGVI 438
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 191 EVLKIVKQRLIKVDGKV--RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 364
EV K+ ++ I+ G DP+Y +D +S+++ + RL+ D + + R+ E
Sbjct: 194 EVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVED---KELMKRVAEE 250
Query: 365 EAKYKLCKVKRV 400
+C + +
Sbjct: 251 NIMLTMCPLSNL 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,936
Number of Sequences: 5004
Number of extensions: 38565
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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