Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1946
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 194 3e-50
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 190 7e-49
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 189 1e-48
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 29 1.6
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 3.7
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 6.4
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 27 8.5
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 194 bits (474), Expect = 3e-50
Identities = 89/132 (67%), Positives = 105/132 (79%)
Frame = +2
Query: 104 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 283
PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVV
Sbjct: 47 PSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVV 106
Query: 284 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPXNVPYLVTHDGRTIRYP 463
SI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G +P+L T+DGRTIRYP
Sbjct: 107 SIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYP 166
Query: 464 XPLIKXNDSIXL 499
PLIK ND+I +
Sbjct: 167 DPLIKANDTIKI 178
Score = 35.1 bits (77), Expect = 0.032
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +3
Query: 12 WREALKKHLKRLNAPKSW 65
W LKKHLKRLNAP W
Sbjct: 17 WARGLKKHLKRLNAPSHW 34
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 55 PNHGMLDKLGGVYAPXTVNRSPQVARVLAP 144
P+H MLDKLGG +AP + P AR P
Sbjct: 31 PSHWMLDKLGGAFAPKP-SSGPHKARECLP 59
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 190 bits (462), Expect = 7e-49
Identities = 85/132 (64%), Positives = 104/132 (78%)
Frame = +2
Query: 104 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 283
PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+
Sbjct: 31 PSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVI 90
Query: 284 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPXNVPYLVTHDGRTIRYP 463
SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G +PYL T+DGRTIRYP
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYP 150
Query: 464 XPLIKXNDSIXL 499
PLIK ND+I +
Sbjct: 151 DPLIKANDTIKI 162
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 24 LKKHLKRLNAPKSW 65
LKKHLKRLNAPK W
Sbjct: 5 LKKHLKRLNAPKHW 18
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 55 PNHGMLDKLGGVYAPXTVNRSPQVARVLAP 144
P H MLDKLGG +AP + P +R P
Sbjct: 15 PKHWMLDKLGGAFAPKP-SSGPHKSRECLP 43
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 189 bits (460), Expect = 1e-48
Identities = 84/132 (63%), Positives = 104/132 (78%)
Frame = +2
Query: 104 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 283
PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+
Sbjct: 31 PSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVI 90
Query: 284 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPXNVPYLVTHDGRTIRYP 463
SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G +PYL T+DGRTIRYP
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYP 150
Query: 464 XPLIKXNDSIXL 499
P+IK ND+I +
Sbjct: 151 DPIIKANDTIKI 162
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 24 LKKHLKRLNAPKSW 65
LKKHLKRLNAPK W
Sbjct: 5 LKKHLKRLNAPKHW 18
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 55 PNHGMLDKLGGVYAPXTVNRSPQVARVLAP 144
P H MLDKLGG +AP + P +R P
Sbjct: 15 PKHWMLDKLGGAFAPKP-SSGPHKSRECLP 43
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 203 FSGLRFRSKHTSDDSSGKSPGASTRATCG--DRLTVXGAYTPP 81
FSGLR S+ S S SP A++ CG D + PP
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCGGNDAPAAVNGFAPP 51
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 308 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 412
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 277 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 182
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 2 LSNMARGPXEAFEALKRSQIMXCWTNLAVCMHRXPSTGPHKLRECLPLVIFLRNRLK 172
L+N++ G A EA+ ++ W NL + +H S K R+C P I N K
Sbjct: 128 LTNISDGLPHANEAIDNART--AWENLTISVHNSTSKQIKKERQC-PYSIHRMNASK 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,408,423
Number of Sequences: 37544
Number of extensions: 258008
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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