Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1946
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   177   5e-45
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   3.3  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    27   5.8  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    27   5.8  
Z81069-5|CAB02995.1|  504|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  177 bits (430), Expect = 5e-45
 Identities = 82/130 (63%), Positives = 98/130 (75%)
 Frame = +2

Query: 104 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 283
           P+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR+++VDGKVRT   +P GFMDVV
Sbjct: 30  PNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVV 89

Query: 284 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPXNVPYLVTHDGRTIRYP 463
           +IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T    VP L T DGRTIRYP
Sbjct: 90  AIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYP 149

Query: 464 XPLIKXNDSI 493
            P +K ND+I
Sbjct: 150 DPHVKVNDTI 159



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 55 PNHGMLDKLGGVYA 96
          P+H MLDKLGGV+A
Sbjct: 14 PSHWMLDKLGGVFA 27


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 450  VRPSCVTKYGTXLGPVATRLTLHNLYLASSGVIRWIVNLPLT 325
            V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 880  VNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +2

Query: 332 GRFTIHRITPEEAKYKLCKVKRVATGPXNVP-----YLVTHDGRTIR-YP 463
           G+  + R+T  E  Y+ CK+++ A     VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical
           protein Y50E8A.5 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 98  RXPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMD 277
           R    GP  +  C        N +KY L  N+   IV      V+ K++ D    AG+  
Sbjct: 77  RHAENGPVTVTRCQRGETQNMNWVKYGLPVNQGDSIVSDDKCLVENKLKKDGDSCAGYCM 136

Query: 278 VVSIEKTNE 304
            ++I +T++
Sbjct: 137 TINITRTDD 145


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 280 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 143
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 280 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 143
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277


>Z81069-5|CAB02995.1|  504|Caenorhabditis elegans Hypothetical
           protein F25H9.5 protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 49  TLPNHGMLDKLGGVYAPXT 105
           TLPN+G+ DK GG   P T
Sbjct: 30  TLPNYGLKDKSGGNIMPWT 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,176,660
Number of Sequences: 27780
Number of extensions: 219249
Number of successful extensions: 577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)