Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1945
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 29 0.64
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 28 1.1
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ... 27 2.6
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 27 3.4
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 3.4
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 26 4.5
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 25 7.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.9
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 7.9
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 373 PYNETLVDPDYWDLDEFHPSAANFDKFDWTLTKRVAAVSGDNFLIS 510
P T+ P + E PS ++ D LT R AAV G +FL+S
Sbjct: 120 PIEATIPAPSPYLFSEPLPSISSLDLDVLRLTARYAAVRGSSFLVS 165
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = -3
Query: 584 DDSSNFVLPVAAS--VSIANANFR-----PRGEIKKLSPETAATRLVRVQSNLSKFAADG 426
DDS+ +LP V N+ PRGEI P L R + N F DG
Sbjct: 453 DDSAGSLLPCTEMKLVDCEEGNYNSHGHPPRGEIWLRGPSLTRGYLNRDKENKESFTPDG 512
Query: 425 W 423
W
Sbjct: 513 W 513
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -2
Query: 216 HYRNHRGLSQTARKNQKAKKERSSRQFYDCGLVNKNEFAL 97
HY+ +R ++ K + ++ R GL N N+F++
Sbjct: 40 HYKTYRRITDCPEIKNKKSRRKNQRNSSSIGLSNPNKFSI 79
>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 596 KPSTDDSSNFVLPVAASVSIANANFRPRGEIKKLSPETAATRLVRVQSNLS 444
KPS S + IA+ F PR + KL+P A L ++QS+ S
Sbjct: 52 KPSAAGSGSTAPKPVTEREIASTRFMPRKNVIKLTP-LAVEHLKKMQSSAS 101
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 518 PRGEIKKLSPETAATRLVRVQSNLSKFAADGW 423
PRGE+ P L R + N + F DGW
Sbjct: 489 PRGEVWIRGPAVCNGYLNRPEDNKAAFTEDGW 520
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 283 TLRDVFGYGSTYSPIG-AVATETYRQVVAVTPYNETLVDPDYWDLD 417
T ++ +G +SP G A A T ++ + YN+ L DP D+D
Sbjct: 668 TRPEIICHGVQFSPSGGAFAAATTEGLMIYSLYNDFLFDPINLDMD 713
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 406 WDLDEFHPSAANFDKFDW 459
W L +HP NFD+ +W
Sbjct: 113 WPLFHYHPGEINFDEENW 130
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 595 SQAPTTVPISYYLWPPL*V*PMPTLDPGGRSRSYHPRLQLHA*SGS 458
S +P+ P++ L+P + +P + PG + ++HP LH GS
Sbjct: 83 SSSPSLSPMTPNLYPNV----LPNVHPGVSNYTHHPLSGLHQNVGS 124
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 208 SIVYITFFAAQILLCS-SATANIDPNTLRDVFGYGSTYS 321
SI +T +I C S TANI N L D FG+ TYS
Sbjct: 1553 SIFAVTANNMKINACPLSETANIS-NQLADPFGFRYTYS 1590
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 529 ALAILTE-AATGNTKLELSSVLGFAL 603
A+AIL+E TG+ KL S++LG L
Sbjct: 461 AMAILSEYLETGSVKLRASAILGLGL 486
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,292
Number of Sequences: 5004
Number of extensions: 56483
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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