Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1945
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 37 0.018
04_04_0619 + 26652923-26653267,26653440-26654273 34 0.12
03_05_0294 + 22855503-22855946,22856346-22856399 33 0.22
11_01_0771 + 6453130-6454488 32 0.50
11_02_0012 - 7346282-7347136,7347234-7347593 31 0.88
04_04_0620 + 26656072-26656417,26656585-26657396 30 1.5
03_06_0628 - 35179951-35180265,35180653-35180889,35180982-351811... 29 2.7
10_08_0909 - 21487512-21487564,21487938-21488292,21489433-214894... 29 3.5
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 3.5
01_06_0824 - 32243495-32244319,32244449-32244859 29 4.7
>01_01_1152 + 9170628-9171899
Length = 423
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 469 KRVAAVSGD---NFLISPLGLKLALAILTEAATGNTKLELSSVLG 594
+R AA G NF++SPL ALA++ + A G T+ EL LG
Sbjct: 48 RRAAAAGGGQGRNFIVSPLSFHAALALVADGARGETQRELLGFLG 92
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 478 AAVSGDNFLISPLGLKLALAILTEAATGNTKLELSSVLG 594
A NF+ SPLGL+ LA+L G T +L + LG
Sbjct: 15 AITEQSNFMFSPLGLRAGLALLATGTDGETLRQLLAFLG 53
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 478 AAVSGDNFLISPLGLKLALAILTEAATGNTKLELSSVLG 594
A G N SPL L +AL+++ A G T+ +L S+LG
Sbjct: 39 AGAGGSNVAFSPLSLHVALSLVAAGAGGATRDQLVSLLG 77
>11_01_0771 + 6453130-6454488
Length = 452
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 463 LTKRVAAVS-GDNFLISPLGLKLALAILTEAATGNTKLELSSVLGFA 600
L R+ A S G N SPL + AL++ A G T E+ +VLG A
Sbjct: 26 LADRLGAASPGRNLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAA 72
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 31.1 bits (67), Expect = 0.88
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 487 SGDNFLISPLGLKLALAILTEAATGNTKLELSSVLGFA-LDRREVRIK 627
S N + SP+ L ALA++ A G T EL ++LG A LD E ++
Sbjct: 29 SNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESVR 76
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 478 AAVSGDNFLISPLGLKLALAILTEAATGNTKLELSSVLG 594
A NF+ SP+ L+ LA+L A G T ++ + LG
Sbjct: 15 AITEQSNFIFSPMCLRAGLALLATGADGETLRQMLAFLG 53
>03_06_0628 -
35179951-35180265,35180653-35180889,35180982-35181140,
35181673-35181864,35182696-35182983,35183289-35183342,
35183561-35183671,35183780-35184011,35184097-35184302
Length = 597
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +1
Query: 409 DLDEFHPSAANFDKFDWT-LTKRVAAVSGDNFLISPLGLKLALAILTEAATGNTKLELSS 585
DLDEF + A +W L V +S + PL ++ L +L+ +A L S
Sbjct: 184 DLDEFVGADA---VQEWKKLLDAVIPISAAAMALPPLSIRGDLGVLSTSAGRYAPSLLKS 240
Query: 586 VLGF----ALDRREVRIKFSTIIDSLXKQNP 666
+L AL ++ FS I+DSL +NP
Sbjct: 241 ILQMGPQGALGATKLLRPFSEIVDSLGLKNP 271
>10_08_0909 -
21487512-21487564,21487938-21488292,21489433-21489488,
21491640-21491778,21493519-21493674,21493983-21494171,
21494403-21494444,21494445-21494699
Length = 414
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 83 SIDLINANSFLLTRPQS*NCLELRSFFAFWFFLAVCD 193
+I +I+ N L + C++LRS +W F VC+
Sbjct: 52 AIPIIDLNKLLSPQSSEEECVKLRSACQYWGFFQVCN 88
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 256 SATANIDPNTLRDVFGYGSTYSPIGAVATETYRQVVAVTPYNE 384
SAT N N R V Y T S +GA+ E Y P+ E
Sbjct: 207 SATGNFTMNAFRSVTSYHETSSNVGALNREYYSVAEDEKPFFE 249
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 490 GD-NFLISPLGLKLALAILTEAATGNTKLELSSVLG 594
GD N +SPL L ALA+L A G T ++ + LG
Sbjct: 30 GDKNLAVSPLSLHAALALLGAGARGETLDQIIAFLG 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,384,744
Number of Sequences: 37544
Number of extensions: 347184
Number of successful extensions: 871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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