Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1944
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 31 1.3
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 30 2.4
03_05_0573 - 25737373-25737774 29 4.1
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 29 5.4
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 28 7.2
11_02_0037 - 7613632-7613727,7614452-7615507 28 7.2
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 28 9.5
02_05_0827 - 32051086-32051445 28 9.5
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 9.5
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820 28 9.5
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 7 KQLYSGDFPDILALLXAYRPRSINPLXEVPSKLRAVV 117
++L +GDF L LL +Y P +I+ L + +KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 132 HLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKR 242
H H +PPHL R+ + A P R LH PT R
Sbjct: 20 HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLR 56
>03_05_0573 - 25737373-25737774
Length = 133
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 132 HLHVRRSPPHLPRKL----SLRIGARPRR*KLHAANPTSKRKTQGSYFGR*ERSYHR 290
H RR PP LPR + S G RP R + A G+ FG+ +R +HR
Sbjct: 53 HRLQRRDPPLLPRLVRWPPSSSPGVRPGRATVEAVAAEEAVVGSGASFGQAQRRHHR 109
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 7 KQLYSGDFPDILALLXAYRPRSINPLXEVPSKL 105
K+L +GDF L LL Y P +I+ L V +KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 7 KQLYSGDFPDILALLXAYRPRSINPLXEVPSKLRAVVVN 123
++L +GDF + LL Y P +I+ L + ++LR V +
Sbjct: 448 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 486
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +2
Query: 542 GKICTSESEFGNAYRLARSCPXVQAPE-HXHHQLHDAFLP 658
G + +G AY AR+ P P H HH H +P
Sbjct: 232 GLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +1
Query: 199 HVDRNFTLLIQLQNGKPKALILEDKSGAIIELKENGQAILNGASKGFPIIEKDVFAFRQP 378
HV R + + IL+D ++ L E ++NG+S+G P++ P
Sbjct: 44 HVSRELRMTAEGSKYADGEAILKDAFQRMVTLIELDH-VINGSSQGLPLLAGVNVVVHLP 102
Query: 379 SNRI--GVGSLYGLMVFCTSKLEVCYIEA 459
+ + GV Y L V T IEA
Sbjct: 103 GDELNFGVDESYNLSVPATGSPIYAQIEA 131
>02_05_0827 - 32051086-32051445
Length = 119
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 628 PSPAARCIPSPRLRTGLWGNIAA 696
P+ AARC P PRL G G AA
Sbjct: 78 PAAAARCPPDPRLSAGFGGWPAA 100
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 121 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDR 210
NGQH+ +D R F G RY H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330
>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
Length = 357
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 637 AARCIPSPRLRTGLW 681
AA C P P+LR GLW
Sbjct: 6 AAACSPKPKLRRGLW 20
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,648,725
Number of Sequences: 37544
Number of extensions: 476066
Number of successful extensions: 1412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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