Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1943
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.2  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    27   3.8  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   6.7  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 295  LSEIRHGRQYQTLHP*DLLSLQPTHLYPLHFQHNILLYTLPLTVPSSHHLE 143
            L E R GR Y +     L  + P HL  L     +L Y+ PL+ P   +L+
Sbjct: 1094 LHESRSGRVYMS----PLTEISPEHLARLAKNTTLLSYSKPLSYPPIRYLD 1140


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 288 RFVMADSIKLFIHEIFYHFSQLISIHYI 205
           R VM  ++ L     +YHF QL+  HYI
Sbjct: 240 RLVMPPALFLIFATPWYHFIQLVLPHYI 267


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 217 YPLHFQHNILLYTLPLTVPSSHHLELPYHVQQLVVKLSS 101
           YP + ++ ILL   P ++  S HL    H+  +V +++S
Sbjct: 485 YPEYRENTILLQVAPESLQDSEHLP---HISDIVTRINS 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,179
Number of Sequences: 5004
Number of extensions: 48737
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)