Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1943
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205...    32   0.57 
08_02_1197 + 25199614-25199795,25200241-25200308,25200309-252004...    29   5.3  
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159...    28   7.0  
09_02_0444 - 9444340-9444829,9444985-9445688                           28   9.3  
01_05_0471 + 22535477-22535609,22535714-22535808,22535929-225360...    28   9.3  

>01_01_0250 +
           2052599-2053358,2053581-2053604,2054813-2054848,
           2055047-2056284
          Length = 685

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 133 GMGAPGGEKTAQLMAVYIARYCVENV-VDRDELAEVIEDL 249
           G G+PGGE+ A+ MA+ I  +C++ V  +R  + +V+E L
Sbjct: 606 GAGSPGGEEIARKMAL-IGLWCIQTVPANRPSMGKVLEML 644


>08_02_1197 +
           25199614-25199795,25200241-25200308,25200309-25200400,
           25200940-25201019,25201418-25201535,25202371-25202562
          Length = 243

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 82  VDLVLNNWTALQLAVEHGMGAPGGEKTAQLMA 177
           + LV   WTALQ+AVE+  G       A  +A
Sbjct: 24  IGLVFGRWTALQMAVENQWGGRDSRAKADQLA 55


>12_02_0478 +
           19514509-19514940,19515749-19515820,19515954-19515986,
           19516169-19516830,19516905-19517045,19518634-19518830,
           19518878-19518965,19518987-19519041,19519501-19519571,
           19519709-19519763,19519881-19519896,19520286-19520361,
           19521202-19521240,19521312-19521333
          Length = 652

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 247 DLLSLQPTHLYPLHFQHNILLYTLPLTVPSS 155
           DL+SLQ  H+ P  +Q++I  Y   +T  +S
Sbjct: 610 DLISLQVNHIMPCAYQYHIPFYRRSVTTRAS 640


>09_02_0444 - 9444340-9444829,9444985-9445688
          Length = 397

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 358 RARIEAMPKCQKWLSQPIHESVPPQH 435
           R  ++A+P   +W S P H+  PP H
Sbjct: 235 RFSLDALPAGLRWSSSPQHDDEPPFH 260


>01_05_0471 +
           22535477-22535609,22535714-22535808,22535929-22536050,
           22536165-22536702,22536774-22538105
          Length = 739

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 643 LTNISTIVVLRYLLFPPSSNHGSSQVQ 563
           LT  S I++L   + PP++NHG +  +
Sbjct: 25  LTGASNIILLHIAVHPPAANHGFAMAE 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,845,354
Number of Sequences: 37544
Number of extensions: 291597
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)