Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1943
         (760 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071640-1|AAL49262.1|  195|Drosophila melanogaster RE68515p pro...    90   3e-18
AE014297-3914|AAF56562.1|  195|Drosophila melanogaster CG14543-P...    90   3e-18
AY049775-1|AAL12211.1|  422|Drosophila melanogaster histamine-ga...    30   3.0  
AF435470-1|AAL74414.1|  422|Drosophila melanogaster histamine-ga...    30   3.0  
AF382402-1|AAL66187.1|  422|Drosophila melanogaster histamine-ga...    30   3.0  
AE014297-1379|AAN13530.2|  422|Drosophila melanogaster CG14723-P...    30   3.0  
AY071000-1|AAL48622.1|  220|Drosophila melanogaster RE08857p pro...    29   9.1  
AY060676-1|AAL28224.1|  696|Drosophila melanogaster GH10944p pro...    29   9.1  
AL031765-8|CAA21126.1|  592|Drosophila melanogaster EG:22E5.7 pr...    29   9.1  
AE014298-318|AAF45712.1|  696|Drosophila melanogaster CG4281-PA ...    29   9.1  
AE014134-1809|AAF52892.1|  220|Drosophila melanogaster CG4946-PA...    29   9.1  

>AY071640-1|AAL49262.1|  195|Drosophila melanogaster RE68515p
           protein.
          Length = 195

 Score = 90.2 bits (214), Expect = 3e-18
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
 Frame = +1

Query: 67  DFKPIVDLVLNNWTALQLAVEHGMGAPGGEKTAQLMAVYIARYCVENV-VDRDELAEVIE 243
           +F+ IV+ + N+W  L+LAVEHGMG   G++ A  +  Y  +YCV N  + + EL EV+E
Sbjct: 12  NFRVIVEKIFNHWQDLRLAVEHGMGGRNGQQVAIEIMDYTYQYCVSNENITQGELVEVLE 71

Query: 244 DLMDEEFDTVCHDESPKEIANXXXXXXXXXKEGHHDELRARIEAMPKCQKWLSQPIHESV 423
           +LMD+EF+T+C D+S  EI           ++    ++ A +  +P  ++WL   +  + 
Sbjct: 72  ELMDQEFNTLCDDDSIPEICRNLLRYKLMAQQNQFPQIEAELSKLPAGKEWLRPDVKITY 131

Query: 424 PP 429
            P
Sbjct: 132 TP 133


>AE014297-3914|AAF56562.1|  195|Drosophila melanogaster CG14543-PA
           protein.
          Length = 195

 Score = 90.2 bits (214), Expect = 3e-18
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
 Frame = +1

Query: 67  DFKPIVDLVLNNWTALQLAVEHGMGAPGGEKTAQLMAVYIARYCVENV-VDRDELAEVIE 243
           +F+ IV+ + N+W  L+LAVEHGMG   G++ A  +  Y  +YCV N  + + EL EV+E
Sbjct: 12  NFRVIVEKIFNHWQDLRLAVEHGMGGRNGQQVAIEIMDYTYQYCVSNENITQGELVEVLE 71

Query: 244 DLMDEEFDTVCHDESPKEIANXXXXXXXXXKEGHHDELRARIEAMPKCQKWLSQPIHESV 423
           +LMD+EF+T+C D+S  EI           ++    ++ A +  +P  ++WL   +  + 
Sbjct: 72  ELMDQEFNTLCDDDSIPEICRNLLRYKLMAQQNQFPQIEAELSKLPAGKEWLRPDVKITY 131

Query: 424 PP 429
            P
Sbjct: 132 TP 133


>AY049775-1|AAL12211.1|  422|Drosophila melanogaster histamine-gated
           chloride channelsubunit B protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 YCVENVVDRDELAEVIEDLMDEEFDTVCH 279
           Y  EN+ D D+L    E +++ ++DT CH
Sbjct: 362 YSDENISDLDDLKHHRESIIEPQYDTFCH 390


>AF435470-1|AAL74414.1|  422|Drosophila melanogaster histamine-gated
           chloride channelalpha2 subunit protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 YCVENVVDRDELAEVIEDLMDEEFDTVCH 279
           Y  EN+ D D+L    E +++ ++DT CH
Sbjct: 362 YSDENISDLDDLKHHRESIIEPQYDTFCH 390


>AF382402-1|AAL66187.1|  422|Drosophila melanogaster histamine-gated
           chloride channelsubunit 1 variant protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 YCVENVVDRDELAEVIEDLMDEEFDTVCH 279
           Y  EN+ D D+L    E +++ ++DT CH
Sbjct: 362 YSDENISDLDDLKHHRESIIEPQYDTFCH 390


>AE014297-1379|AAN13530.2|  422|Drosophila melanogaster CG14723-PB,
           isoform B protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 YCVENVVDRDELAEVIEDLMDEEFDTVCH 279
           Y  EN+ D D+L    E +++ ++DT CH
Sbjct: 362 YSDENISDLDDLKHHRESIIEPQYDTFCH 390


>AY071000-1|AAL48622.1|  220|Drosophila melanogaster RE08857p
           protein.
          Length = 220

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 288 RFVMADSIKLFIHEIFYHFSQLISIHYIFNTISCYIH 178
           R ++    ++F+H   +HF +++SI    +  +CY H
Sbjct: 153 RKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKH 189


>AY060676-1|AAL28224.1|  696|Drosophila melanogaster GH10944p
           protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 208 HFQHNILLYTLPLTVPSSHHLELPYHVQQ 122
           H Q ++ LY LP +     H+E P H QQ
Sbjct: 211 HEQDSVKLYALPHSQVDDQHVEQPQHQQQ 239


>AL031765-8|CAA21126.1|  592|Drosophila melanogaster EG:22E5.7
           protein.
          Length = 592

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 208 HFQHNILLYTLPLTVPSSHHLELPYHVQQ 122
           H Q ++ LY LP +     H+E P H QQ
Sbjct: 111 HEQDSVKLYALPHSQVDDQHVEQPQHQQQ 139


>AE014298-318|AAF45712.1|  696|Drosophila melanogaster CG4281-PA
           protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 208 HFQHNILLYTLPLTVPSSHHLELPYHVQQ 122
           H Q ++ LY LP +     H+E P H QQ
Sbjct: 211 HEQDSVKLYALPHSQVDDQHVEQPQHQQQ 239


>AE014134-1809|AAF52892.1|  220|Drosophila melanogaster CG4946-PA
           protein.
          Length = 220

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 288 RFVMADSIKLFIHEIFYHFSQLISIHYIFNTISCYIH 178
           R ++    ++F+H   +HF +++SI    +  +CY H
Sbjct: 153 RKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKH 189


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,854,531
Number of Sequences: 53049
Number of extensions: 521046
Number of successful extensions: 1494
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)