Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1942
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    27   2.3  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    27   3.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   4.1  
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    26   5.4  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   9.5  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    25   9.5  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    25   9.5  

>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 115 MSHSNVKSSVMYPYYQLPVDKLHV 186
           M H+  K S++Y  + LPV +LH+
Sbjct: 279 MFHTEFKCSILYDIWMLPVRQLHL 302


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 621 NVVRDGVIRERATLHQTE*RTELPVFVF*K 532
           N +   V+RE +  H+T  RTE  VFV  K
Sbjct: 152 NAIMTMVVREASPFHRTRARTESSVFVIDK 181


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
 Frame = +1

Query: 202 MQELYLNVKGSEESEGTERTVGSSQAPRFTKTDS-EEFDDAP-----DLCMTNYDTLQVI 363
           +++L L   G  +S   + +VG  + P F+ T S + F         +L + NYDT   I
Sbjct: 59  LEKLKLRKNGVRKSNSEKPSVGIEKNPSFSTTKSAKSFSSTSSNIDSNLDLLNYDTPLTI 118

Query: 364 HGKIYVFEEEWVTVLRDRNVREPGYPKRFHELFIGLPSSIKVIRTIYEK-HDRNVVVFSE 540
               ++ ++     L  +   E  Y K            I+ +  +YE+ HDR  +  +E
Sbjct: 119 SKISFLLQQ-----LEFKLSVEEQYRK-----------GIEKMAKLYEREHDRRSIAEAE 162

Query: 541 NKYWEFSPSFRLMKR 585
            KY E +    L+K+
Sbjct: 163 KKYVESAQKITLLKQ 177


>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 76  FAVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVDK 177
           + + +  I +     H  +  S++YPYY  P +K
Sbjct: 77  YFLRLESIDYEFSEFHIIINESIVYPYYTSPAEK 110


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/82 (21%), Positives = 32/82 (39%)
 Frame = +1

Query: 169 VDKLHVDDILGMQELYLNVKGSEESEGTERTVGSSQAPRFTKTDSEEFDDAPDLCMTNYD 348
           VDK+  D ++    LYL+    E     E     +Q  +     +E      +  +    
Sbjct: 230 VDKVLFDYLVRTYHLYLDESPEESEPEKELKATFNQQNQDLYNQTEALKSTNEELINQIK 289

Query: 349 TLQVIHGKIYVFEEEWVTVLRD 414
           + + +   I V EE + T+ RD
Sbjct: 290 SAEELDSAIQVLEERYRTMQRD 311


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 458 FSLVSRPASKLYGPSMRNTIGTL 526
           FSLVS   + +YGPS ++++G++
Sbjct: 68  FSLVSPGWASIYGPSGQSSVGSV 90


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 508 KHDRNVVVFSENKYWEFSPSFRLMKRGSLTDYSIPDNVTELTTVFI 645
           K + N +VFS N+YW  + +   ++   + D    + V ELT  F+
Sbjct: 233 KANINALVFSPNRYWLCAATGSSIR---IFDLETQEKVDELTVDFV 275


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
 Frame = +1

Query: 199 GMQELYLNVKGSEESEGTERTVGSSQAPRFTKTDSEEFDDAPDLCMTNYDTLQVIHGKIY 378
           G  EL ++  G+ +S    +T+G+       +  +  FDDA DL   + + L+ +  ++Y
Sbjct: 82  GNMELIIDQHGNSDS--VVQTLGA-----IFQIKNGSFDDAMDLLKKSVENLEAVALQVY 134

Query: 379 VFEEEWVTVLRDRNVREPGYPKRFHELFIGLPSS-IKVIRTIYEKHDRNVVVFSE 540
           +   E      ++ +++        E+ + L  S IK++    E ++    VF E
Sbjct: 135 IHLREHKIEAAEQTLKQ-ALDWADEEIVLQLAQSWIKIVSGGVESYNDAFYVFEE 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,632
Number of Sequences: 5004
Number of extensions: 61348
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)