Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1942
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 54 2e-07
02_05_0697 - 30999644-31000762 52 5e-07
06_01_0940 + 7235801-7236916 48 1e-05
10_08_0900 - 21436508-21437521 44 1e-04
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 30 2.5
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813... 29 3.3
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877 29 3.3
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +1
Query: 82 VAVHXIGHSLGMSHSNVKSSVMYPYYQLPVDK--LHVDDILGMQELY 216
VA H IGH+LG+ HS +SSVMYPY K L VDD+ G+QELY
Sbjct: 179 VATHEIGHALGLDHSTSESSVMYPYVGTRERKVRLTVDDVEGIQELY 225
Score = 52.4 bits (120), Expect = 4e-07
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +1
Query: 79 AVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVDKLHVDDILGMQELY 216
+VAVH IGH+LG+ HS+ +SS+MY +Y+ V L DD+ G+QELY
Sbjct: 802 SVAVHEIGHALGLGHSSSESSMMYRHYRGKV-SLTDDDVKGVQELY 846
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +1
Query: 79 AVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVDK--LHVDDILGMQELY 216
+VA H IGH LG+ HS+ +SS+MYP+ K L DD+ G+QELY
Sbjct: 438 SVAAHEIGHVLGLDHSSSRSSMMYPFISCRERKVRLTTDDVHGIQELY 485
>02_05_0697 - 30999644-31000762
Length = 372
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +1
Query: 79 AVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVDK--LHVDDILGMQELY 216
+VAVH IGH LG+ HS+V S+MYP + K L DD+LG+Q LY
Sbjct: 275 SVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVLGIQSLY 322
>06_01_0940 + 7235801-7236916
Length = 371
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +1
Query: 79 AVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVDKLHV--DDILGMQELY---LNVKGSEES 243
+VAVH IGH LG+ HS+ S+M+P K+++ DD+ G+Q LY N KG
Sbjct: 274 SVAVHEIGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAGIQGLYGNNPNFKGVTPP 333
Query: 244 EGTERTVGSSQAPRFTKTDSEEFDDAPDL 330
+ R + S+ A ++ D A L
Sbjct: 334 ATSSREMDSAGAGELSRPWRRLLDGAAGL 362
>10_08_0900 - 21436508-21437521
Length = 337
Score = 44.4 bits (100), Expect = 1e-04
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +1
Query: 79 AVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVDK---LHVDDILGMQELY-LNVKGSEESE 246
+VA H IGH LG+ HS +VMYP + P +K L VDD+ G+Q LY N + S S
Sbjct: 247 SVATHEIGHVLGLGHSASPRAVMYPSIK-PREKKVRLTVDDVEGVQALYGSNPQFSLSSL 305
Query: 247 GTERTVGSSQAPR 285
+ T SS +PR
Sbjct: 306 SEQGT--SSSSPR 316
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 535 SENKYWEFSPSFRLMKRGSLTDYSIPDNVTELTTVFISN 651
+ENK EF S + M R +TD I + V++ T + +SN
Sbjct: 670 AENKLMEFQQSGKSMLREEVTDVDIAEIVSKWTGIPVSN 708
>06_02_0148 -
12280794-12280962,12281102-12281210,12281283-12281385,
12281587-12281618,12281709-12281926,12282035-12282150,
12282428-12282683,12282912-12282999,12283393-12283468,
12283562-12283620,12285236-12285305,12285399-12285539
Length = 478
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 130 VKSSVMYPYYQLPVDKLHVDDILG-MQELYLNVKGSEESEGTERTVGSSQAPRFTKTDSE 306
+ S+ M PY DK L M +++ + + RT+ ++ PRFTK S+
Sbjct: 241 IVSNWMIPYEDSKEDKHATKRALDFMYGWFMDPLTKGDYPVSMRTLVGNRLPRFTKEQSK 300
Query: 307 EFDDAPDLCMTNYDTLQVIHG 369
+ + D NY T + I G
Sbjct: 301 AINGSFDFIGLNYYTARYIQG 321
>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
Length = 446
Score = 29.5 bits (63), Expect = 3.3
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Frame = +1
Query: 193 ILGMQELY-LNVKGSEESEG-TERTVGS---SQAPRFTKTDS---EEFDDAPDLC--MTN 342
I+ ++ LY +N +G ES TE VGS + AP + DS EEFD LC +
Sbjct: 375 IVALRVLYGINGQGIWESIAQTENAVGSDPEASAPHSIEPDSNNSEEFDARELLCTLAAS 434
Query: 343 YDTLQVIHG 369
YD + V HG
Sbjct: 435 YDKINVGHG 443
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,214,035
Number of Sequences: 37544
Number of extensions: 411370
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -