Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1942
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc metallopro... 64 8e-11
AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix metall... 64 8e-11
Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF022971-4|AAG23982.2| 579|Caenorhabditis elegans Hypothetical ... 42 7e-04
AB007815-1|BAA28351.1| 579|Caenorhabditis elegans matrix metall... 42 7e-04
AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical ... 41 9e-04
AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical ... 41 9e-04
AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix metall... 41 9e-04
U00038-1|AAA50663.2| 279|Caenorhabditis elegans Hypothetical pr... 32 0.55
AF099191-1|AAF78096.1| 279|Caenorhabditis elegans MMP-like prot... 32 0.55
Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 30 1.7
AF106589-7|AAN73853.1| 843|Caenorhabditis elegans Hypothetical ... 29 2.9
AF106589-6|AAN73852.1| 841|Caenorhabditis elegans Hypothetical ... 29 2.9
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 29 5.1
U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical p... 28 8.9
>U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc
metalloprotease protein 1 protein.
Length = 521
Score = 64.5 bits (150), Expect = 8e-11
Identities = 64/250 (25%), Positives = 98/250 (39%), Gaps = 9/250 (3%)
Frame = +1
Query: 76 FAVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVDKLHVDDILGMQELYLNVKGSEESEGTE 255
++V H +GH+LG SHS SVM+ Y K D M+ Y +E+E E
Sbjct: 210 YSVVAHEMGHALGFSHSPDIDSVMFAYDTPRKWKFTSMDKYNMRSYYGAKASKKENEEEE 269
Query: 256 RTVGSSQAPRFTKTD-----SEEFDD-APDLCMTNYDTLQVIHGKIYVFEEEWVTVLRDR 417
R + R T+ D E DD P+ C + G+ +F+ +WV +
Sbjct: 270 RKTENEDKRRKTEKDRGRTREHESDDIRPNECRVENPIVVQYRGEYLIFKSQWVWRVSSD 329
Query: 418 NVREPGYPKRFHELFIGLPSSIKVIRTIYEKHDRNVVVFSENKYWEFSPSFRLMKRGSLT 597
R ++LF GLP+ I T+ N+ VF + + + L+
Sbjct: 330 WKRLIIKAVPINQLFPGLPNPIDAAVTV----GHNLWVFVGEMIYVIYGNHMVHAPLRLS 385
Query: 598 DYSIPDNVTELTTVFISNYNNRTYLIEXERXWRXDE--LTGTMGEXYPKDXS-TWXDVPY 768
D I + +L + Y+ + R W+ DE + E YPKD W VP
Sbjct: 386 DIGINEKYVDLAYEWHYFNPPAVYIWKGSRYWKLDEKMYHRRVDERYPKDTDLNWARVPK 445
Query: 769 PVDAAIVXXK 798
V +A K
Sbjct: 446 GVHSAFTYEK 455
>AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 521
Score = 64.5 bits (150), Expect = 8e-11
Identities = 64/250 (25%), Positives = 98/250 (39%), Gaps = 9/250 (3%)
Frame = +1
Query: 76 FAVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVDKLHVDDILGMQELYLNVKGSEESEGTE 255
++V H +GH+LG SHS SVM+ Y K D M+ Y +E+E E
Sbjct: 210 YSVVAHEMGHALGFSHSPDIDSVMFAYDTPRKWKFTSMDKYNMRSYYGAKASKKENEEEE 269
Query: 256 RTVGSSQAPRFTKTD-----SEEFDD-APDLCMTNYDTLQVIHGKIYVFEEEWVTVLRDR 417
R + R T+ D E DD P+ C + G+ +F+ +WV +
Sbjct: 270 RKTENEDKRRKTEKDRGRTREHESDDIRPNECRVENPIVVQYRGEYLIFKSQWVWRVSSD 329
Query: 418 NVREPGYPKRFHELFIGLPSSIKVIRTIYEKHDRNVVVFSENKYWEFSPSFRLMKRGSLT 597
R ++LF GLP+ I T+ N+ VF + + + L+
Sbjct: 330 WKRLIIKAVPINQLFPGLPNPIDAAVTV----GHNLWVFVGEMIYVIYGNHMVHAPLRLS 385
Query: 598 DYSIPDNVTELTTVFISNYNNRTYLIEXERXWRXDE--LTGTMGEXYPKDXS-TWXDVPY 768
D I + +L + Y+ + R W+ DE + E YPKD W VP
Sbjct: 386 DIGINEKYVDLAYEWHYFNPPAVYIWKGSRYWKLDEKMYHRRVDERYPKDTDLNWARVPK 445
Query: 769 PVDAAIVXXK 798
V +A K
Sbjct: 446 GVHSAFTYEK 455
>Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical
protein H36L18.1 protein.
Length = 446
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 76 FAVAVHXIGHSLGMSHSNVKSSVMYPYYQL---PVDKLHVDDILGMQELY 216
+AVAVH IGHSLG+ HS+ S+M P+Y+ V LH DDI ++ LY
Sbjct: 112 YAVAVHEIGHSLGLKHSSNHLSIMAPFYKQYTGAVMHLHQDDISAVKRLY 161
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = +1
Query: 436 YPKRFHELFIGLPSSIKVIRTIYEKHDRNVVVFSENKYWEFSPSFRLMKRG 588
Y H+++I +S I ++ ++ + +F +NKYW+ S +++G
Sbjct: 383 YKFSVHKIYISFQNSPPEIDAAFQLNNTSSFLFHQNKYWKVSGDPMRIEKG 433
>AF022971-4|AAG23982.2| 579|Caenorhabditis elegans Hypothetical
protein C31B8.8 protein.
Length = 579
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 79 AVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVD--------KLHVDDILGMQELYLNVKGS 234
AVA+H GH+LG+ HS ++++M P+YQ D L DDI +Q +Y
Sbjct: 250 AVAIHEGGHTLGLEHSRDENAIMAPFYQKTTDSSGNYVYPNLKSDDISAIQAIY-GAGSG 308
Query: 235 EESEGTERTVGSSQAPRFT 291
S G++ S R T
Sbjct: 309 RSSSGSDFGGSSGGGSRTT 327
>AB007815-1|BAA28351.1| 579|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 579
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Frame = +1
Query: 79 AVAVHXIGHSLGMSHSNVKSSVMYPYYQLPVD--------KLHVDDILGMQELYLNVKGS 234
AVA+H GH+LG+ HS ++++M P+YQ D L DDI +Q +Y
Sbjct: 250 AVAIHEGGHTLGLEHSRDENAIMAPFYQKTTDSSGNYVYPNLKSDDISAIQAIY-GAGSG 308
Query: 235 EESEGTERTVGSSQAPRFT 291
S G++ S R T
Sbjct: 309 RSSSGSDFGGSSGGGSRTT 327
>AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical
protein H19M22.3c protein.
Length = 453
Score = 41.1 bits (92), Expect = 9e-04
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +1
Query: 82 VAVHXIGHSLGMSHSNVKSSVMYPYYQ-LPVDKLHVD 189
V H IGH+LG+ HS ++M+PYY+ +P++++ +D
Sbjct: 241 VLAHEIGHALGLDHSQKADALMHPYYKNVPINEIQLD 277
>AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical
protein H19M22.3a protein.
Length = 519
Score = 41.1 bits (92), Expect = 9e-04
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +1
Query: 82 VAVHXIGHSLGMSHSNVKSSVMYPYYQ-LPVDKLHVD 189
V H IGH+LG+ HS ++M+PYY+ +P++++ +D
Sbjct: 273 VLAHEIGHALGLDHSQKADALMHPYYKNVPINEIQLD 309
>AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 394
Score = 41.1 bits (92), Expect = 9e-04
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +1
Query: 82 VAVHXIGHSLGMSHSNVKSSVMYPYYQ-LPVDKLHVD 189
V H IGH+LG+ HS ++M+PYY+ +P++++ +D
Sbjct: 182 VLAHEIGHALGLDHSQKADALMHPYYKNVPINEIQLD 218
>U00038-1|AAA50663.2| 279|Caenorhabditis elegans Hypothetical
protein T21D11.1 protein.
Length = 279
Score = 31.9 bits (69), Expect = 0.55
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 76 FAVAVHXIGHSLGMSHSNVKSSVMY----PYYQLPVDKLHVDDILGMQELYLNVKGSEES 243
F AVH IGH LG+ HS + M+ PY P L DD+ ++ L+ + ++ +
Sbjct: 157 FQTAVHEIGHLLGLEHSMDVRAAMFAAKRPYD--PAFTLGDDDVRAIRSLF-PINETDAN 213
Query: 244 EGTE 255
G+E
Sbjct: 214 SGSE 217
>AF099191-1|AAF78096.1| 279|Caenorhabditis elegans MMP-like protein
protein.
Length = 279
Score = 31.9 bits (69), Expect = 0.55
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 76 FAVAVHXIGHSLGMSHSNVKSSVMY----PYYQLPVDKLHVDDILGMQELYLNVKGSEES 243
F AVH IGH LG+ HS + M+ PY P L DD+ ++ L+ + ++ +
Sbjct: 157 FQTAVHEIGHLLGLEHSMDVRAAMFAAKRPYD--PAFTLGDDDVRAIRSLF-PINETDAN 213
Query: 244 EGTE 255
G+E
Sbjct: 214 SGSE 217
>Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical
protein W09D12.1 protein.
Length = 472
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Frame = +1
Query: 88 VHXIGHSLGMSHSNVKSSVMYPYYQ---LP---VDKLHVDDILGMQELY 216
+H IGH LG+ H+ + S+M+P ++ LP VD + D L ++++Y
Sbjct: 219 LHEIGHILGLPHTFYRGSIMHPIFKPVLLPHGTVDTVPNVDRLAIRKIY 267
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 377 TCSKKSGSQFFVIETSESPGTRRDSMSFSLVSRPASKLYGPSMRNTIGTLSSFQKTNT 550
T +S + TS +P T ++S S V+ P+S S + G+ ++ Q++ T
Sbjct: 659 TIESESSTSAVASSTSSTPSTPSSTLSTSTVTEPSSTRSSDSTTTSAGSTTTLQESTT 716
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 377 TCSKKSGSQFFVIETSESPGTRRDSMSFSLVSRPASKLYGPSMRNTIGTLSSFQKTNT 550
T +S + TS +P T ++S S V+ P+S S + G+ ++ Q++ T
Sbjct: 659 TIESESSTSAVASSTSSTPSTPSSTLSTSTVTEPSSTRSSDSTTTSAGSTTTLQESTT 716
>AF106589-7|AAN73853.1| 843|Caenorhabditis elegans Hypothetical
protein Y44E3A.6b protein.
Length = 843
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 367 RV*LARCRSWSCIGRARHRTPR 302
+V L C+SW C+GR R T R
Sbjct: 324 KVALYECQSWKCLGRIRFETTR 345
>AF106589-6|AAN73852.1| 841|Caenorhabditis elegans Hypothetical
protein Y44E3A.6a protein.
Length = 841
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 367 RV*LARCRSWSCIGRARHRTPR 302
+V L C+SW C+GR R T R
Sbjct: 324 KVALYECQSWKCLGRIRFETTR 345
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 28.7 bits (61), Expect = 5.1
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +1
Query: 397 VTVLRDRNVREPGYPKRFHELFIGLP-SSIKVIRTIYEKHDRNVVVFSENKYWEFSPSFR 573
VT + + R+ P+R H+L IG S ++VIR + H VVF + K S S
Sbjct: 484 VTKIENEKSRDIIIPQRLHKLIIGSKGSGVQVIR---DSHPNVSVVFPDAK----SKSDV 536
Query: 574 LMKRGSLTDY-SIPDNVTELTTVFISNYNNRTYLIEXE 684
+ RG T+ ++ +T L+ + N +T I E
Sbjct: 537 VNIRGDKTEVDAVYKKLTALSKEYAENNYQQTVAIFKE 574
>U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical
protein C18A3.2 protein.
Length = 363
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 88 VHXIGHSLGMSHSNVKSSVMYPYYQLPVDKLHVDD 192
+H IGHS+G HS+ S + + ++K H ++
Sbjct: 105 IHGIGHSIGNGHSHSGHSPLATSDSIKMNKFHDEE 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,125,275
Number of Sequences: 27780
Number of extensions: 355367
Number of successful extensions: 1020
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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